cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_cAd-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo AlignmentStat 659_cAd-T1-TDNA-1_A23MHWWLT4_1.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo 659_cAd-T1-TDNA-1_A23MHWWLT4_1.sentieon.insert_size_metrics --algo QualDistribution 659_cAd-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle 659_cAd-T1-TDNA-1_A23MHWWLT4_1.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle 659_cAd-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 8.4s, est remaining 159.3s, peak mem 3082MB, user 203.3s, sys 2.9s, output queue size 84
progress 10% @chr2:27000001, elapsed 16.3s, est remaining 146.9s, peak mem 4596MB, user 448.8s, sys 4.9s, output queue size 79
progress 15% @chr3:4000001, elapsed 26.5s, est remaining 150.2s, peak mem 6704MB, user 746.3s, sys 7.4s, output queue size 122
progress 20% @chr3:174000001, elapsed 34.3s, est remaining 137.3s, peak mem 6808MB, user 995.4s, sys 8.4s, output queue size 174
progress 25% @chr4:134000001, elapsed 41.5s, est remaining 124.5s, peak mem 6925MB, user 1211.2s, sys 9.1s, output queue size 302
progress 30% @chr5:75000001, elapsed 47.1s, est remaining 110.0s, peak mem 7290MB, user 1393.5s, sys 9.8s, output queue size 464
progress 35% @chr6:41000001, elapsed 54.7s, est remaining 101.7s, peak mem 7421MB, user 1614.6s, sys 11.3s, output queue size 625
progress 40% @chr7:79000001, elapsed 64.2s, est remaining 96.2s, peak mem 7944MB, user 1854.5s, sys 12.4s, output queue size 786
progress 45% @chr8:66000001, elapsed 75.7s, est remaining 92.5s, peak mem 8161MB, user 2143.7s, sys 13.5s, output queue size 948
progress 50% @chr9:87000001, elapsed 84.6s, est remaining 84.6s, peak mem 8546MB, user 2396.8s, sys 14.6s, output queue size 1110
progress 55% @chr10:101000001, elapsed 94.6s, est remaining 77.4s, peak mem 8546MB, user 2754.8s, sys 15.9s, output queue size 527
progress 60% @chr10:87000001, elapsed 104.0s, est remaining 69.3s, peak mem 8546MB, user 3065.0s, sys 16.8s, output queue size 689
progress 65% @chr12:92000001, elapsed 116.5s, est remaining 62.7s, peak mem 8546MB, user 3368.6s, sys 17.8s, output queue size 851
progress 70% @chr14:70000001, elapsed 123.5s, est remaining 52.9s, peak mem 8546MB, user 3572.3s, sys 18.4s, output queue size 1012
progress 75% @chr16:42000001, elapsed 134.6s, est remaining 44.9s, peak mem 8645MB, user 3975.8s, sys 19.6s, output queue size 995
progress 80% @chr18:13000001, elapsed 148.2s, est remaining 37.1s, peak mem 8737MB, user 4398.8s, sys 20.9s, output queue size 623
progress 85% @chr20:23000001, elapsed 159.6s, est remaining 28.2s, peak mem 8769MB, user 4761.7s, sys 21.6s, output queue size 785
progress 90% @chrX:32000001, elapsed 167.8s, est remaining 18.6s, peak mem 9078MB, user 5005.0s, sys 22.2s, output queue size 947
progress 95% @chrY:54000001, elapsed 174.9s, est remaining 9.2s, peak mem 9157MB, user 5175.0s, sys 23.0s, output queue size 1109
progress 100% @chrX:67000001, elapsed 197.4s, est remaining 0.0s, peak mem 9257MB, user 5550.9s, sys 24.0s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 59984754244
reads: 1231081686
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 995.038 user 20.340 sys 1015.874 real
done: 1 calls 0.039 user 0.000 sys 0.041 real
exec_no_coor: 1 calls 0.015 user 0.029 sys 0.065 real
execute: 1 calls 0.002 user 0.001 sys 197.528 real
idle: 605 calls 0.211 user 0.001 sys 578.209 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9706958848 mem 5553.172 user 24.548 sys 198.970 real