Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/d48431c7b5765fd6f4f76ac5db2eba/1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/dca9cb2af673900c86fab6a35dcf86/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/d48431c7b5765fd6f4f76ac5db2eba/1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/dca9cb2af673900c86fab6a35dcf86/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_6G2-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 3.7s, est remaining 71.1s, peak mem 2999MB, user 76.3s, sys 3.4s, output queue size 150
progress 10% @chr2:58000001, elapsed 6.5s, est remaining 58.2s, peak mem 4153MB, user 172.2s, sys 5.8s, output queue size 166
progress 15% @chr2:224000001, elapsed 9.5s, est remaining 53.8s, peak mem 5220MB, user 263.3s, sys 7.6s, output queue size 210
progress 20% @chr3:167000001, elapsed 12.1s, est remaining 48.4s, peak mem 5220MB, user 342.6s, sys 8.5s, output queue size 283
progress 25% @chr4:124000001, elapsed 14.4s, est remaining 43.1s, peak mem 5274MB, user 413.3s, sys 9.5s, output queue size 302
progress 30% @chr5:100000001, elapsed 16.0s, est remaining 37.3s, peak mem 5413MB, user 459.9s, sys 10.0s, output queue size 464
progress 35% @chr6:37000001, elapsed 18.8s, est remaining 34.8s, peak mem 5540MB, user 530.4s, sys 10.6s, output queue size 625
progress 40% @chr7:48000001, elapsed 21.7s, est remaining 32.6s, peak mem 5699MB, user 631.9s, sys 11.6s, output queue size 195
progress 45% @chr8:54000001, elapsed 25.0s, est remaining 30.5s, peak mem 5800MB, user 724.2s, sys 12.4s, output queue size 356
progress 50% @chr9:81000001, elapsed 27.5s, est remaining 27.5s, peak mem 5900MB, user 801.0s, sys 12.9s, output queue size 366
progress 55% @chr9:134000001, elapsed 30.9s, est remaining 25.3s, peak mem 6332MB, user 898.2s, sys 13.6s, output queue size 485
progress 60% @chr11:101000001, elapsed 34.5s, est remaining 23.0s, peak mem 6332MB, user 997.6s, sys 14.5s, output queue size 510
progress 65% @chr13:35000001, elapsed 37.8s, est remaining 20.3s, peak mem 6392MB, user 1091.1s, sys 15.4s, output queue size 672
progress 70% @chr14:79000001, elapsed 39.5s, est remaining 16.9s, peak mem 6393MB, user 1185.8s, sys 16.1s, output queue size 299
progress 75% @chr16:42000001, elapsed 43.2s, est remaining 14.4s, peak mem 6458MB, user 1281.9s, sys 16.9s, output queue size 461
progress 80% @chr18:25000001, elapsed 49.2s, est remaining 12.3s, peak mem 6657MB, user 1423.4s, sys 18.1s, output queue size 623
progress 85% @chr19:35000001, elapsed 55.3s, est remaining 9.8s, peak mem 6775MB, user 1621.3s, sys 19.5s, output queue size 785
progress 90% @chrX:42000001, elapsed 58.3s, est remaining 6.5s, peak mem 6775MB, user 1745.2s, sys 20.3s, output queue size 513
progress 95% @chrY:54000001, elapsed 60.0s, est remaining 3.2s, peak mem 6775MB, user 1789.7s, sys 20.7s, output queue size 675
progress 100% @chr22:23000001, elapsed 68.2s, est remaining 0.0s, peak mem 6775MB, user 1881.6s, sys 21.4s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 56390667151
reads: 1090474054
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 874.411 user 18.537 sys 894.406 real
done: 1 calls 0.017 user 0.037 sys 0.055 real
exec_no_coor: 1 calls 0.006 user 0.012 sys 0.029 real
execute: 1 calls 0.004 user 0.002 sys 68.241 real
idle: 275 calls 0.181 user 0.001 sys 241.440 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7104376832 mem 1882.706 user 21.576 sys 69.485 real