File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/0421fe4061543d6a3e61b2579d79c4/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_5KC-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 3.1s, est remaining 59.2s, peak mem 2683MB, user 71.7s, sys 2.3s, output queue size 145
progress 10% @chr1:156000001, elapsed 5.6s, est remaining 50.3s, peak mem 3434MB, user 152.3s, sys 3.7s, output queue size 166
progress 15% @chr3:8000001, elapsed 8.2s, est remaining 46.2s, peak mem 4818MB, user 228.9s, sys 5.2s, output queue size 203
progress 20% @chr3:174000001, elapsed 10.4s, est remaining 41.6s, peak mem 5054MB, user 295.1s, sys 6.7s, output queue size 283
progress 25% @chr4:129000001, elapsed 12.3s, est remaining 36.8s, peak mem 5054MB, user 356.2s, sys 7.3s, output queue size 302
progress 30% @chr5:100000001, elapsed 13.7s, est remaining 32.1s, peak mem 5109MB, user 395.5s, sys 7.8s, output queue size 464
progress 35% @chr5:132000001, elapsed 16.0s, est remaining 29.7s, peak mem 5109MB, user 456.7s, sys 8.5s, output queue size 625
progress 40% @chr6:135000001, elapsed 18.5s, est remaining 27.7s, peak mem 5318MB, user 523.3s, sys 9.2s, output queue size 786
progress 45% @chr8:23000001, elapsed 21.2s, est remaining 25.9s, peak mem 5573MB, user 621.8s, sys 10.1s, output queue size 204
progress 50% @chr9:88000001, elapsed 23.4s, est remaining 23.4s, peak mem 5684MB, user 683.1s, sys 10.6s, output queue size 366
progress 55% @chr10:99000001, elapsed 26.2s, est remaining 21.4s, peak mem 5873MB, user 769.3s, sys 11.4s, output queue size 348
progress 60% @chr12:5000001, elapsed 28.9s, est remaining 19.3s, peak mem 5873MB, user 847.3s, sys 12.1s, output queue size 510
progress 65% @chr13:26000001, elapsed 31.7s, est remaining 17.1s, peak mem 6042MB, user 924.0s, sys 12.8s, output queue size 672
progress 70% @chr14:35000001, elapsed 33.3s, est remaining 14.3s, peak mem 6042MB, user 975.6s, sys 13.2s, output queue size 833
progress 75% @chr16:42000001, elapsed 36.4s, est remaining 12.1s, peak mem 6042MB, user 1080.4s, sys 13.9s, output queue size 461
progress 80% @chr18:1, elapsed 40.7s, est remaining 10.2s, peak mem 6042MB, user 1196.4s, sys 14.8s, output queue size 623
progress 85% @chr17:40000001, elapsed 44.8s, est remaining 7.9s, peak mem 6042MB, user 1329.0s, sys 15.6s, output queue size 785
progress 90% @chrX:30000001, elapsed 47.4s, est remaining 5.3s, peak mem 6101MB, user 1421.7s, sys 16.3s, output queue size 513
progress 95% @chrY:54000001, elapsed 49.4s, est remaining 2.6s, peak mem 6188MB, user 1466.7s, sys 16.7s, output queue size 675
progress 100% @chrX:67000001, elapsed 55.7s, est remaining 0.0s, peak mem 6204MB, user 1554.0s, sys 17.4s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50938789543
reads: 986308211
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 771.954 user 15.014 sys 791.696 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.006 user 0.000 sys 0.012 real
execute: 1 calls 0.004 user 0.004 sys 55.687 real
idle: 202 calls 0.143 user 0.001 sys 183.724 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 6506377216 mem 1554.965 user 17.715 sys 57.065 real