File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/8dd5abda729f818f6e69ce189ddb8d/.command.err
Size
4.0 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_27F-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_27F-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 8.0s, est remaining 152.0s, peak mem 5680MB, user 179.9s, sys 4.5s, output queue size 146
progress 10% @chr2:58000001, elapsed 14.4s, est remaining 129.4s, peak mem 7366MB, user 384.5s, sys 6.8s, output queue size 166
progress 15% @chr3:8000001, elapsed 20.4s, est remaining 115.6s, peak mem 8815MB, user 580.5s, sys 9.4s, output queue size 161
progress 20% @chr3:167000001, elapsed 25.6s, est remaining 102.3s, peak mem 8815MB, user 738.0s, sys 10.6s, output queue size 283
progress 25% @chr4:124000001, elapsed 30.2s, est remaining 90.6s, peak mem 8839MB, user 874.9s, sys 11.5s, output queue size 302
progress 30% @chr5:106000001, elapsed 33.5s, est remaining 78.3s, peak mem 8839MB, user 973.6s, sys 12.2s, output queue size 464
progress 35% @chr6:86000001, elapsed 39.1s, est remaining 72.6s, peak mem 9091MB, user 1125.6s, sys 13.2s, output queue size 625
progress 40% @chr7:48000001, elapsed 47.1s, est remaining 70.6s, peak mem 10209MB, user 1371.4s, sys 15.1s, output queue size 195
progress 45% @chr8:83000001, elapsed 54.2s, est remaining 66.2s, peak mem 10602MB, user 1574.0s, sys 16.5s, output queue size 212
progress 50% @chr9:102000001, elapsed 59.9s, est remaining 59.9s, peak mem 13734MB, user 1747.8s, sys 17.7s, output queue size 324
progress 55% @chr10:120000001, elapsed 67.7s, est remaining 55.4s, peak mem 15565MB, user 1948.1s, sys 18.8s, output queue size 485
progress 60% @chr12:5000001, elapsed 75.6s, est remaining 50.4s, peak mem 15908MB, user 2202.8s, sys 20.9s, output queue size 647
progress 65% @chr13:36000001, elapsed 82.6s, est remaining 44.5s, peak mem 16127MB, user 2439.1s, sys 22.0s, output queue size 809
progress 70% @chr13:113000001, elapsed 86.9s, est remaining 37.2s, peak mem 16169MB, user 2575.1s, sys 22.8s, output queue size 970
progress 75% @chr16:42000001, elapsed 96.1s, est remaining 32.0s, peak mem 16169MB, user 2814.3s, sys 24.0s, output queue size 1132
progress 80% @chr18:29000001, elapsed 109.7s, est remaining 27.4s, peak mem 16782MB, user 3149.5s, sys 25.9s, output queue size 1294
progress 85% @chr19:42000001, elapsed 122.6s, est remaining 21.6s, peak mem 17287MB, user 3564.0s, sys 27.7s, output queue size 1456
progress 90% @chrX:15000001, elapsed 131.2s, est remaining 14.6s, peak mem 17710MB, user 3836.8s, sys 29.1s, output queue size 1618
progress 95% @chrY:54000001, elapsed 135.2s, est remaining 7.1s, peak mem 17934MB, user 3975.4s, sys 29.9s, output queue size 1780
progress 100% @chr7:55000001, elapsed 400.3s, est remaining 0.0s, peak mem 20018MB, user 4491.0s, sys 40.3s, output queue size 5204
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 99749239266
reads: 2068464941
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1621.655 user 32.990 sys 1655.936 real
done: 1 calls 0.326 user 0.019 sys 0.347 real
exec_no_coor: 1 calls 0.023 user 0.031 sys 0.077 real
execute: 1 calls 0.002 user 0.001 sys 400.683 real
idle: 7957 calls 0.368 user 0.045 sys 7929.375 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 20991004672 mem 4492.919 user 41.285 sys 402.977 real