Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/bfaa36c1235160a2e153cd6163ed64/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/c025f6442a44865e6b81532c7accfe/1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/bfaa36c1235160a2e153cd6163ed64/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/c025f6442a44865e6b81532c7accfe/1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_8DV-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_8DV-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 3.3s, est remaining 63.3s, peak mem 2366MB, user 71.9s, sys 1.7s, output queue size 146
progress 10% @chr2:91000001, elapsed 6.4s, est remaining 57.2s, peak mem 3613MB, user 162.3s, sys 3.3s, output queue size 172
progress 15% @chr2:237000001, elapsed 8.8s, est remaining 50.0s, peak mem 4216MB, user 248.9s, sys 5.6s, output queue size 188
progress 20% @chr3:155000001, elapsed 10.9s, est remaining 43.8s, peak mem 4216MB, user 314.6s, sys 6.4s, output queue size 283
progress 25% @chr4:136000001, elapsed 12.7s, est remaining 38.1s, peak mem 4216MB, user 374.4s, sys 6.9s, output queue size 302
progress 30% @chr5:107000001, elapsed 14.0s, est remaining 32.8s, peak mem 4216MB, user 413.4s, sys 7.2s, output queue size 464
progress 35% @chr6:78000001, elapsed 16.0s, est remaining 29.7s, peak mem 4216MB, user 472.9s, sys 7.6s, output queue size 106
progress 40% @chr7:48000001, elapsed 18.1s, est remaining 27.2s, peak mem 4249MB, user 535.4s, sys 8.3s, output queue size 195
progress 45% @chr8:78000001, elapsed 20.6s, est remaining 25.2s, peak mem 4357MB, user 601.1s, sys 9.0s, output queue size 356
progress 50% @chr9:88000001, elapsed 23.0s, est remaining 23.0s, peak mem 4689MB, user 679.7s, sys 9.7s, output queue size 187
progress 55% @chr10:115000001, elapsed 25.6s, est remaining 21.0s, peak mem 4983MB, user 762.9s, sys 10.2s, output queue size 253
progress 60% @chr11:130000001, elapsed 28.2s, est remaining 18.8s, peak mem 4983MB, user 840.6s, sys 11.1s, output queue size 312
progress 65% @chr12:1, elapsed 30.4s, est remaining 16.4s, peak mem 5022MB, user 914.6s, sys 11.7s, output queue size 167
progress 70% @chr13:101000001, elapsed 31.8s, est remaining 13.6s, peak mem 5022MB, user 957.0s, sys 12.1s, output queue size 299
progress 75% @chr16:42000001, elapsed 34.3s, est remaining 11.4s, peak mem 5022MB, user 1021.8s, sys 12.6s, output queue size 461
progress 80% @chr18:10000001, elapsed 38.8s, est remaining 9.7s, peak mem 5022MB, user 1137.4s, sys 13.4s, output queue size 623
progress 85% @chr19:52000001, elapsed 42.7s, est remaining 7.5s, peak mem 5043MB, user 1275.5s, sys 14.5s, output queue size 351
progress 90% @chr21:44000001, elapsed 45.2s, est remaining 5.0s, peak mem 5043MB, user 1369.1s, sys 15.1s, output queue size 78
progress 95% @chrY:54000001, elapsed 47.0s, est remaining 2.5s, peak mem 5178MB, user 1416.5s, sys 15.5s, output queue size 240
progress 100% @chr22:23000001, elapsed 51.4s, est remaining 0.0s, peak mem 5186MB, user 1467.5s, sys 15.9s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 45110700362
reads: 909143983
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 718.562 user 13.475 sys 731.807 real
done: 1 calls 0.010 user 0.019 sys 0.030 real
exec_no_coor: 1 calls 0.006 user 0.006 sys 0.021 real
execute: 1 calls 0.007 user 0.002 sys 51.433 real
idle: 150 calls 0.112 user 0.001 sys 140.203 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 5438279680 mem 1468.534 user 16.028 sys 52.688 real