File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/11842099072d1015e72722d9d984b5/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 61552408
total bases: 9294413608
Q20 bases: 9067044535(97.5537%)
Q30 bases: 8677621769(93.3638%)
Q40 bases: 8677621769(93.3638%)

Read2 before filtering:
total reads: 61552408
total bases: 9294413608
Q20 bases: 9029209699(97.1466%)
Q30 bases: 8575882789(92.2692%)
Q40 bases: 8575882789(92.2692%)

Read1 after filtering:
total reads: 61067960
total bases: 8405012664
Q20 bases: 8264603241(98.3295%)
Q30 bases: 7951419878(94.6033%)
Q40 bases: 7951419878(94.6033%)

Read2 after filtering:
total reads: 61067960
total bases: 8406255947
Q20 bases: 8233684248(97.9471%)
Q30 bases: 7881374184(93.7561%)
Q40 bases: 7881374184(93.7561%)

Filtering result:
reads passed filter: 122135920
reads failed due to low quality: 960436
reads failed due to too many N: 6248
reads failed due to too short: 2212
reads with adapter trimmed: 44491570
bases trimmed due to adapters: 1636206890

Duplication rate: 10.1705%

Insert size peak (evaluated by paired-end reads): 128

JSON report: 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L005_R1_001.fastq.gz --in2 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L005_R2_001.fastq.gz --out1 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 342 seconds