Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/77e705a92eb5a495a970537d2215dc/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/3e3d39f0664f31d4db697ffa24661d/1136_81F-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/77e705a92eb5a495a970537d2215dc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/3e3d39f0664f31d4db697ffa24661d/1136_81F-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_81F-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_81F-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 4.3s, est remaining 82.3s, peak mem 2887MB, user 102.1s, sys 3.2s, output queue size 146
progress 10% @chr2:79000001, elapsed 7.2s, est remaining 64.9s, peak mem 3434MB, user 199.0s, sys 5.6s, output queue size 166
progress 15% @chr2:224000001, elapsed 10.4s, est remaining 58.8s, peak mem 4034MB, user 297.0s, sys 8.0s, output queue size 122
progress 20% @chr3:130000001, elapsed 13.5s, est remaining 53.8s, peak mem 4089MB, user 390.2s, sys 8.9s, output queue size 141
progress 25% @chr4:132000001, elapsed 16.2s, est remaining 48.5s, peak mem 4309MB, user 466.7s, sys 9.5s, output queue size 302
progress 30% @chr5:75000001, elapsed 18.1s, est remaining 42.3s, peak mem 4387MB, user 535.4s, sys 9.9s, output queue size 268
progress 35% @chr6:70000001, elapsed 21.3s, est remaining 39.6s, peak mem 4764MB, user 622.7s, sys 10.9s, output queue size 106
progress 40% @chr7:70000001, elapsed 24.5s, est remaining 36.7s, peak mem 4895MB, user 722.4s, sys 11.7s, output queue size 195
progress 45% @chr8:66000001, elapsed 28.1s, est remaining 34.4s, peak mem 4895MB, user 824.9s, sys 12.6s, output queue size 204
progress 50% @chr9:81000001, elapsed 30.8s, est remaining 30.8s, peak mem 5059MB, user 912.7s, sys 13.1s, output queue size 187
progress 55% @chr10:103000001, elapsed 34.5s, est remaining 28.2s, peak mem 5272MB, user 1028.6s, sys 14.1s, output queue size 342
progress 60% @chr11:66000001, elapsed 38.6s, est remaining 25.8s, peak mem 5666MB, user 1147.1s, sys 14.8s, output queue size 136
progress 65% @chr13:27000001, elapsed 42.3s, est remaining 22.8s, peak mem 5805MB, user 1256.1s, sys 15.6s, output queue size 216
progress 70% @chr14:71000001, elapsed 44.5s, est remaining 19.1s, peak mem 5845MB, user 1311.0s, sys 16.1s, output queue size 377
progress 75% @chr16:42000001, elapsed 48.5s, est remaining 16.2s, peak mem 6168MB, user 1438.3s, sys 17.0s, output queue size 531
progress 80% @chr18:9000001, elapsed 54.3s, est remaining 13.6s, peak mem 6230MB, user 1609.7s, sys 18.4s, output queue size 280
progress 85% @chr19:10000001, elapsed 60.1s, est remaining 10.6s, peak mem 6230MB, user 1795.6s, sys 19.6s, output queue size 80
progress 90% @chr22:21000001, elapsed 63.1s, est remaining 7.0s, peak mem 6230MB, user 1913.5s, sys 20.3s, output queue size 121
progress 95% @chrY:55000001, elapsed 65.8s, est remaining 3.5s, peak mem 6230MB, user 1988.1s, sys 20.8s, output queue size 240
progress 100% @chrX:154000001, elapsed 69.0s, est remaining 0.0s, peak mem 6230MB, user 2052.0s, sys 21.2s, output queue size 3453
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 63239640700
reads: 1187143287
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1003.620 user 18.233 sys 1021.255 real
done: 1 calls 0.019 user 0.020 sys 0.042 real
exec_no_coor: 1 calls 0.009 user 0.027 sys 0.052 real
execute: 1 calls 0.001 user 0.000 sys 69.039 real
idle: 133 calls 0.149 user 0.001 sys 96.229 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 6533148672 mem 2053.002 user 21.357 sys 70.303 real