Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/cdf4eaf574f8c3ce29bc7fec978af1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/4e07c604189c65e0372f8cde255b7b/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/db2dfac316dd5cb6005b99a29c8d75/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/8632e6651fa7bca668982a6bf56989/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/1acb11b5c6883014d35cee35666f5d/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/867dbb884f29235e1484aa07c326b0/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/7bbbb761e8b523ac03924068435d1b/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/d36966886fb8511b67f4fe267cbd66/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/e4bb904f67dbe9f6951db49869051e/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/02c8afc0f88361421f9c86c4a738c4/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/7e1599635213317b52df5e93f1ffde/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/4cf7dd343cf5b01c5508f2df2d38ec/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/5fb5aca8f0ba8d59b743a30f75edd6/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/8cd05e59914d22bce2e98f8972c22d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/4384b21351599878389df51cff6624/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/5416aacbb5ced90d37f05222cf2719/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/e28a58e5654d8df368746c4e973409/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/0eec3dbed456e6891d8c3531221ede/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/105ee958eec974d19da53b4a988904/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/620b4da73384960f9da29a98f5d645/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/be7113d3611dd4b8dffd1a55599d92/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/208a13d31fde01c9b4b30e591fede0/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/61b990041cbd44eafe465d2ddfdb60/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/9b8122ee193930c178ae8cbb764fef/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/202db4d8dbe9a5c78144cc5a364c28/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/56195f39150905bf56c360059cd724/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/1efea3d2c19c206677d49bc851e03d/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/bcf89a18224246f10fd98cf838a42f/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/58127371db6f71744580f9b100407b/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/9aa24411440d648332e0066c9f5401/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/b8c7f8e8e41a8e5e41772bc585491e/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/8cd05e59914d22bce2e98f8972c22d/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/0f5d3238e8336e45bde2abfa3adca9/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/8972965b584357fbcce112a82ff849/1047_JG-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (36 inputs)
ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory