cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 25.5s, est remaining 484.7s, peak mem 5526MB, user 633.0s, sys 8.7s, output queue size 42
progress 10% @chr2:69000001, elapsed 47.8s, est remaining 430.6s, peak mem 6882MB, user 1333.9s, sys 12.8s, output queue size 48
progress 15% @chr2:201000001, elapsed 77.2s, est remaining 437.5s, peak mem 8220MB, user 2188.2s, sys 17.8s, output queue size 122
progress 20% @chr3:52000001, elapsed 97.3s, est remaining 389.2s, peak mem 8256MB, user 2816.9s, sys 21.0s, output queue size 283
progress 25% @chr4:54000001, elapsed 115.0s, est remaining 344.9s, peak mem 8335MB, user 3325.1s, sys 23.2s, output queue size 444
progress 30% @chr5:107000001, elapsed 129.0s, est remaining 300.9s, peak mem 8350MB, user 3748.3s, sys 25.1s, output queue size 606
progress 35% @chr6:79000001, elapsed 151.6s, est remaining 281.5s, peak mem 8929MB, user 4423.6s, sys 28.2s, output queue size 70
progress 40% @chr7:41000001, elapsed 177.0s, est remaining 265.4s, peak mem 10160MB, user 5130.1s, sys 31.1s, output queue size 195
progress 45% @chr8:58000001, elapsed 211.3s, est remaining 258.2s, peak mem 10447MB, user 6128.9s, sys 35.7s, output queue size 345
progress 50% @chr9:86000001, elapsed 233.7s, est remaining 233.7s, peak mem 14442MB, user 6756.1s, sys 38.6s, output queue size 507
progress 55% @chr10:99000001, elapsed 258.0s, est remaining 211.1s, peak mem 14988MB, user 7465.4s, sys 41.5s, output queue size 668
progress 60% @chr11:94000001, elapsed 286.6s, est remaining 191.0s, peak mem 16186MB, user 8396.6s, sys 45.7s, output queue size 647
progress 65% @chr13:30000001, elapsed 310.4s, est remaining 167.1s, peak mem 16186MB, user 9149.5s, sys 48.7s, output queue size 809
progress 70% @chr14:83000001, elapsed 331.8s, est remaining 142.2s, peak mem 16284MB, user 9764.6s, sys 51.3s, output queue size 970
progress 75% @chr16:42000001, elapsed 358.6s, est remaining 119.5s, peak mem 16346MB, user 10552.4s, sys 54.9s, output queue size 1132
progress 80% @chr18:10000001, elapsed 393.4s, est remaining 98.3s, peak mem 16484MB, user 11495.8s, sys 58.8s, output queue size 1294
progress 85% @chr20:3000001, elapsed 428.0s, est remaining 75.5s, peak mem 16507MB, user 12556.4s, sys 63.3s, output queue size 1456
progress 90% @chrX:31000001, elapsed 449.8s, est remaining 50.0s, peak mem 21194MB, user 13278.9s, sys 66.8s, output queue size 1618
progress 95% @chrY:54000001, elapsed 464.6s, est remaining 24.5s, peak mem 21194MB, user 13722.6s, sys 68.6s, output queue size 1780
progress 100% @chr7:55000001, elapsed 1453.8s, est remaining 0.0s, peak mem 22207MB, user 15274.4s, sys 87.7s, output queue size 5204
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 71921241447
output file size: 105986061259
reads: 1527741288
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.017 user 0.001 sys 0.021 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.019 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1642.050 user 28.723 sys 1736.757 real
done: 1 calls 0.463 user 0.381 sys 0.854 real
exec_no_coor: 1 calls 0.128 user 0.080 sys 0.221 real
execute: 1 calls 0.007 user 0.001 sys 1466.258 real
fetch: 3219323 calls 111.828 user 0.634 sys 149.326 real
fetch_reads: 3219322 calls 319.094 user 2.902 sys 329.637 real
fetch_ref: 2037008 calls 6.887 user 1.362 sys 8.670 real
fetch_vcf: 2037008 calls 98.335 user 1.555 sys 106.309 real
idle: 1017575 calls 158.786 user 7.835 sys 29703.162 real
init: 1 calls 0.002 user 0.000 sys 0.025 real
update: 2304986 calls 2702.823 user 5.316 sys 2850.799 real
write: 3219323 calls 11118.660 user 43.098 sys 11230.656 real
overall: 23285989376 mem 15512.733 user 130.335 sys 1468.665 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.029 user 0.000 sys 0.041 real
done: 1 calls 0.050 user 0.020 sys 0.076 real
idle: 61 calls 0.002 user 0.000 sys 31.315 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.081 user 0.046 sys 1.055 real