File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/14fdbb7be6ea4e621798a6e3fdd424/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (1136_7OW-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/65a76bf015f7b8fdbddb42893b5546/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/14fdbb7be6ea4e621798a6e3fdd424/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/9071a9ccb952090b09296c319a99d2/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/211f2ece650acf9d4d03dde9f33ee2/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/52ab49302d2340c3f77349b6755ded/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/551691a62cbfaf9ff4f462cc713a38/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/a957533123ca9596477922e6222902/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/14fdbb7be6ea4e621798a6e3fdd424/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/300b09206137d70665ce0f7d3752ce/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/4a607a2f12617daa6aadbd989f3512/1136_7OW-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory