Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/badeaccbb8bbd266b7ad577e62f1ee/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/80c7a3c2df156fb3104ea9d1721b43/1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/80c7a3c2df156fb3104ea9d1721b43/1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/badeaccbb8bbd266b7ad577e62f1ee/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 3.5s, est remaining 67.4s, peak mem 3184MB, user 75.9s, sys 2.1s, output queue size 150
progress 10% @chr2:58000001, elapsed 6.6s, est remaining 59.5s, peak mem 4402MB, user 178.0s, sys 4.4s, output queue size 117
progress 15% @chr3:17000001, elapsed 10.7s, est remaining 60.5s, peak mem 7546MB, user 289.5s, sys 7.2s, output queue size 203
progress 20% @chr3:158000001, elapsed 13.9s, est remaining 55.7s, peak mem 8176MB, user 393.0s, sys 10.4s, output queue size 283
progress 25% @chr4:135000001, elapsed 16.3s, est remaining 48.8s, peak mem 8225MB, user 471.9s, sys 11.1s, output queue size 302
progress 30% @chr5:100000001, elapsed 18.2s, est remaining 42.5s, peak mem 8225MB, user 523.3s, sys 11.6s, output queue size 464
progress 35% @chr6:91000001, elapsed 21.4s, est remaining 39.7s, peak mem 8225MB, user 610.7s, sys 12.5s, output queue size 625
progress 40% @chr7:47000001, elapsed 24.9s, est remaining 37.4s, peak mem 8225MB, user 719.3s, sys 13.5s, output queue size 195
progress 45% @chr8:23000001, elapsed 28.8s, est remaining 35.2s, peak mem 8225MB, user 842.0s, sys 14.8s, output queue size 204
progress 50% @chr8:143000001, elapsed 32.1s, est remaining 32.1s, peak mem 8225MB, user 940.2s, sys 15.6s, output queue size 324
progress 55% @chr10:103000001, elapsed 36.0s, est remaining 29.4s, peak mem 8401MB, user 1049.2s, sys 16.6s, output queue size 348
progress 60% @chr12:5000001, elapsed 39.3s, est remaining 26.2s, peak mem 8401MB, user 1146.4s, sys 17.6s, output queue size 510
progress 65% @chr13:39000001, elapsed 43.6s, est remaining 23.5s, peak mem 8651MB, user 1259.2s, sys 18.5s, output queue size 672
progress 70% @chr13:109000001, elapsed 46.0s, est remaining 19.7s, peak mem 8727MB, user 1353.9s, sys 19.1s, output queue size 635
progress 75% @chr16:42000001, elapsed 49.7s, est remaining 16.6s, peak mem 8727MB, user 1477.7s, sys 20.1s, output queue size 461
progress 80% @chr18:13000001, elapsed 55.8s, est remaining 13.9s, peak mem 8898MB, user 1635.7s, sys 21.2s, output queue size 623
progress 85% @chr19:57000001, elapsed 61.4s, est remaining 10.8s, peak mem 8898MB, user 1816.1s, sys 22.4s, output queue size 785
progress 90% @chr22:36000001, elapsed 65.3s, est remaining 7.3s, peak mem 8898MB, user 1917.3s, sys 23.1s, output queue size 947
progress 95% @chrY:54000001, elapsed 67.4s, est remaining 3.5s, peak mem 8938MB, user 2014.1s, sys 23.9s, output queue size 675
progress 100% @chr22:23000001, elapsed 75.1s, est remaining 0.0s, peak mem 8945MB, user 2111.9s, sys 24.6s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 67770633046
reads: 1275212856
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1047.843 user 22.137 sys 1066.762 real
done: 1 calls 0.025 user 0.000 sys 0.034 real
exec_no_coor: 1 calls 0.008 user 0.000 sys 0.013 real
execute: 1 calls 0.007 user 0.002 sys 75.136 real
idle: 249 calls 0.101 user 0.001 sys 221.979 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9380315136 mem 2112.753 user 24.854 sys 76.409 real