File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/18b9a9bda768041bc19ef02ba0b1c7/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_85O-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_85O-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 2.9s, est remaining 55.4s, peak mem 2331MB, user 66.5s, sys 1.9s, output queue size 145
progress 10% @chr2:70000001, elapsed 5.7s, est remaining 51.7s, peak mem 3102MB, user 153.3s, sys 3.1s, output queue size 117
progress 15% @chr2:201000001, elapsed 8.2s, est remaining 46.3s, peak mem 3786MB, user 232.1s, sys 4.9s, output queue size 122
progress 20% @chr3:174000001, elapsed 10.4s, est remaining 41.4s, peak mem 3864MB, user 297.3s, sys 5.6s, output queue size 174
progress 25% @chr4:124000001, elapsed 12.3s, est remaining 36.8s, peak mem 4036MB, user 357.2s, sys 6.6s, output queue size 302
progress 30% @chr5:101000001, elapsed 13.8s, est remaining 32.3s, peak mem 4102MB, user 403.3s, sys 7.1s, output queue size 464
progress 35% @chr6:91000001, elapsed 16.5s, est remaining 30.7s, peak mem 4386MB, user 473.4s, sys 8.2s, output queue size 625
progress 40% @chr6:135000001, elapsed 19.2s, est remaining 28.8s, peak mem 5132MB, user 540.6s, sys 9.2s, output queue size 786
progress 45% @chr8:78000001, elapsed 22.2s, est remaining 27.2s, peak mem 5146MB, user 636.2s, sys 10.1s, output queue size 359
progress 50% @chr9:88000001, elapsed 24.5s, est remaining 24.5s, peak mem 5241MB, user 704.2s, sys 11.0s, output queue size 518
progress 55% @chr9:136000001, elapsed 27.0s, est remaining 22.1s, peak mem 5246MB, user 789.9s, sys 11.7s, output queue size 527
progress 60% @chr11:64000001, elapsed 29.4s, est remaining 19.6s, peak mem 5246MB, user 873.5s, sys 12.2s, output queue size 510
progress 65% @chr13:33000001, elapsed 32.0s, est remaining 17.2s, peak mem 5258MB, user 934.6s, sys 12.7s, output queue size 672
progress 70% @chr13:102000001, elapsed 33.5s, est remaining 14.4s, peak mem 5258MB, user 991.3s, sys 13.2s, output queue size 833
progress 75% @chr16:42000001, elapsed 36.4s, est remaining 12.1s, peak mem 5316MB, user 1069.9s, sys 13.7s, output queue size 995
progress 80% @chr17:78000001, elapsed 39.8s, est remaining 10.0s, peak mem 5371MB, user 1177.4s, sys 14.5s, output queue size 623
progress 85% @chr17:40000001, elapsed 43.1s, est remaining 7.6s, peak mem 5371MB, user 1274.7s, sys 15.3s, output queue size 785
progress 90% @chrX:34000001, elapsed 45.1s, est remaining 5.0s, peak mem 5394MB, user 1344.6s, sys 15.8s, output queue size 947
progress 95% @chrY:51000001, elapsed 46.4s, est remaining 2.4s, peak mem 5394MB, user 1375.7s, sys 16.0s, output queue size 1109
progress 100% @chr15:88000001, elapsed 52.0s, est remaining 0.0s, peak mem 5394MB, user 1455.7s, sys 16.5s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 45044196667
reads: 870183887
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 705.365 user 14.328 sys 719.598 real
done: 1 calls 0.016 user 0.009 sys 0.034 real
exec_no_coor: 1 calls 0.015 user 0.000 sys 0.028 real
execute: 1 calls 0.006 user 0.002 sys 52.048 real
idle: 194 calls 0.163 user 0.001 sys 170.298 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 5656084480 mem 1456.704 user 16.669 sys 53.266 real