File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/9c075dd943e7eab64682f26573a3c0/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4XR-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:181000001, elapsed 4.2s, est remaining 80.6s, peak mem 3683MB, user 95.5s, sys 3.2s, output queue size 150
progress 10% @chr2:70000001, elapsed 7.7s, est remaining 68.9s, peak mem 4600MB, user 201.9s, sys 6.1s, output queue size 166
progress 15% @chr2:224000001, elapsed 10.8s, est remaining 61.3s, peak mem 6599MB, user 299.6s, sys 8.0s, output queue size 203
progress 20% @chr3:167000001, elapsed 13.7s, est remaining 54.7s, peak mem 6653MB, user 384.0s, sys 9.6s, output queue size 283
progress 25% @chr4:124000001, elapsed 16.2s, est remaining 48.6s, peak mem 6736MB, user 469.4s, sys 10.6s, output queue size 302
progress 30% @chr5:106000001, elapsed 18.3s, est remaining 42.7s, peak mem 6871MB, user 524.0s, sys 11.1s, output queue size 464
progress 35% @chr6:91000001, elapsed 21.2s, est remaining 39.4s, peak mem 7113MB, user 608.3s, sys 11.8s, output queue size 625
progress 40% @chr7:48000001, elapsed 24.6s, est remaining 36.9s, peak mem 7471MB, user 691.8s, sys 12.7s, output queue size 786
progress 45% @chr8:67000001, elapsed 28.3s, est remaining 34.6s, peak mem 7790MB, user 821.2s, sys 14.1s, output queue size 356
progress 50% @chr9:102000001, elapsed 31.2s, est remaining 31.2s, peak mem 7919MB, user 901.4s, sys 14.9s, output queue size 366
progress 55% @chr10:103000001, elapsed 34.7s, est remaining 28.4s, peak mem 8211MB, user 999.8s, sys 15.7s, output queue size 527
progress 60% @chr12:3000001, elapsed 38.0s, est remaining 25.3s, peak mem 8211MB, user 1116.1s, sys 16.6s, output queue size 510
progress 65% @chr13:24000001, elapsed 41.2s, est remaining 22.2s, peak mem 8211MB, user 1203.8s, sys 17.2s, output queue size 672
progress 70% @chr14:69000001, elapsed 43.3s, est remaining 18.6s, peak mem 8211MB, user 1268.5s, sys 17.8s, output queue size 833
progress 75% @chr16:42000001, elapsed 47.4s, est remaining 15.8s, peak mem 8211MB, user 1402.8s, sys 18.9s, output queue size 461
progress 80% @chr18:1, elapsed 53.1s, est remaining 13.3s, peak mem 8369MB, user 1553.0s, sys 20.3s, output queue size 623
progress 85% @chr20:25000001, elapsed 57.8s, est remaining 10.2s, peak mem 8369MB, user 1690.2s, sys 21.3s, output queue size 785
progress 90% @chrX:36000001, elapsed 61.5s, est remaining 6.8s, peak mem 8369MB, user 1817.8s, sys 22.5s, output queue size 947
progress 95% @chrY:53000001, elapsed 64.1s, est remaining 3.4s, peak mem 8481MB, user 1903.6s, sys 23.1s, output queue size 675
progress 100% @chrX:67000001, elapsed 74.5s, est remaining 0.0s, peak mem 8525MB, user 2030.4s, sys 24.0s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 61364023637
reads: 1205609827
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 956.082 user 20.748 sys 976.997 real
done: 1 calls 0.014 user 0.008 sys 0.029 real
exec_no_coor: 1 calls 0.000 user 0.010 sys 0.016 real
execute: 1 calls 0.006 user 0.002 sys 74.502 real
idle: 318 calls 0.146 user 0.001 sys 284.201 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8939315200 mem 2031.449 user 24.175 sys 75.768 real