cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:120063089, elapsed 9.2s, est remaining 173.9s, peak mem 5453MB, user 244.1s, sys 5.4s, output queue size 199
progress 10% @chr1:243499720, elapsed 17.6s, est remaining 158.4s, peak mem 6691MB, user 473.8s, sys 9.7s, output queue size 1149
progress 15% @chr2:189689527, elapsed 28.6s, est remaining 162.3s, peak mem 8555MB, user 777.0s, sys 13.0s, output queue size 242
progress 20% @chr3:69964845, elapsed 39.5s, est remaining 157.8s, peak mem 8640MB, user 1076.3s, sys 15.4s, output queue size 432
progress 25% @chr4:88521888, elapsed 47.3s, est remaining 141.9s, peak mem 8885MB, user 1288.0s, sys 17.2s, output queue size 89
progress 30% @chr5:147640704, elapsed 54.0s, est remaining 126.0s, peak mem 8885MB, user 1467.0s, sys 18.3s, output queue size 206
progress 35% @chr6:131700469, elapsed 66.6s, est remaining 123.6s, peak mem 10922MB, user 1814.6s, sys 21.4s, output queue size 642
progress 40% @chr7:102248412, elapsed 77.1s, est remaining 115.7s, peak mem 11370MB, user 2101.3s, sys 23.5s, output queue size 1467
progress 45% @chr9:732378, elapsed 87.4s, est remaining 106.9s, peak mem 11370MB, user 2388.1s, sys 25.3s, output queue size 24
progress 50% @chr10:32929822, elapsed 97.2s, est remaining 97.2s, peak mem 11370MB, user 2655.2s, sys 27.2s, output queue size 107
progress 55% @chr11:48144675, elapsed 105.6s, est remaining 86.4s, peak mem 11370MB, user 2882.7s, sys 28.5s, output queue size 16
progress 60% @chr12:25052235, elapsed 115.8s, est remaining 77.2s, peak mem 11370MB, user 3161.1s, sys 30.1s, output queue size 751
progress 65% @chr13:40555668, elapsed 125.3s, est remaining 67.5s, peak mem 11370MB, user 3426.3s, sys 32.0s, output queue size 561
progress 70% @chr15:43067898, elapsed 133.1s, est remaining 57.1s, peak mem 11370MB, user 3637.0s, sys 33.8s, output queue size 455
progress 75% @chr16:30949290, elapsed 143.6s, est remaining 47.9s, peak mem 11370MB, user 3932.6s, sys 35.5s, output queue size 31
progress 80% @chr17:42692499, elapsed 154.6s, est remaining 38.6s, peak mem 11370MB, user 4235.8s, sys 37.5s, output queue size 707
progress 85% @chr19:5739326, elapsed 163.4s, est remaining 28.8s, peak mem 11370MB, user 4479.8s, sys 39.3s, output queue size 407
progress 90% @chr19:55517224, elapsed 172.7s, est remaining 19.2s, peak mem 11370MB, user 4740.4s, sys 41.1s, output queue size 59
progress 95% @chr22:36306414, elapsed 185.0s, est remaining 9.7s, peak mem 11783MB, user 5086.4s, sys 43.5s, output queue size 24
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 194.8s, est remaining 0.0s, peak mem 11783MB, user 5358.5s, sys 45.3s, output queue size 1
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 81150013433
reads: 1554117329
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2981.884 user 37.599 sys 3123.300 real
done: 1 calls 0.364 user 0.308 sys 0.680 real
execute: 1 calls 0.006 user 0.001 sys 194.807 real
fetch_reads: 208647 calls 256.565 user 0.458 sys 263.405 real
fetch_ref: 207065 calls 0.858 user 1.068 sys 2.217 real
fetch_vcf: 207065 calls 80.960 user 2.226 sys 86.221 real
idle: 118 calls 0.176 user 0.010 sys 33.092 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 481187 calls 2363.638 user 2.385 sys 2426.227 real
overall: 12356354048 mem 5891.164 user 46.555 sys 196.450 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory