Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/067ca6aae6e7dc94bc7f1cc2b3f7b4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/b78cdcd32102ea2493c938beb2a4da/1136_253-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/b78cdcd32102ea2493c938beb2a4da/1136_253-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/067ca6aae6e7dc94bc7f1cc2b3f7b4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_253-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_253-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 4.8s, est remaining 90.5s, peak mem 3976MB, user 103.2s, sys 3.2s, output queue size 146
progress 10% @chr2:84000001, elapsed 9.1s, est remaining 82.2s, peak mem 5349MB, user 235.5s, sys 6.1s, output queue size 166
progress 15% @chr2:232000001, elapsed 13.2s, est remaining 74.6s, peak mem 7718MB, user 357.2s, sys 9.2s, output queue size 210
progress 20% @chr3:176000001, elapsed 16.4s, est remaining 65.8s, peak mem 7870MB, user 467.6s, sys 11.6s, output queue size 283
progress 25% @chr4:124000001, elapsed 19.4s, est remaining 58.2s, peak mem 7870MB, user 560.6s, sys 12.7s, output queue size 302
progress 30% @chr5:100000001, elapsed 21.8s, est remaining 50.8s, peak mem 7870MB, user 625.7s, sys 13.3s, output queue size 464
progress 35% @chr6:82000001, elapsed 25.4s, est remaining 47.1s, peak mem 7870MB, user 727.5s, sys 14.4s, output queue size 625
progress 40% @chr7:48000001, elapsed 29.1s, est remaining 43.7s, peak mem 7947MB, user 826.6s, sys 15.3s, output queue size 786
progress 45% @chr8:78000001, elapsed 33.0s, est remaining 40.4s, peak mem 7947MB, user 962.2s, sys 16.3s, output queue size 356
progress 50% @chr9:102000001, elapsed 36.6s, est remaining 36.6s, peak mem 8085MB, user 1060.3s, sys 16.8s, output queue size 366
progress 55% @chr7:13000001, elapsed 40.6s, est remaining 33.2s, peak mem 8268MB, user 1184.6s, sys 17.9s, output queue size 527
progress 60% @chr11:130000001, elapsed 44.7s, est remaining 29.8s, peak mem 8283MB, user 1309.0s, sys 18.7s, output queue size 510
progress 65% @chr13:39000001, elapsed 49.1s, est remaining 26.4s, peak mem 8446MB, user 1427.3s, sys 19.6s, output queue size 672
progress 70% @chr14:76000001, elapsed 51.5s, est remaining 22.1s, peak mem 8446MB, user 1523.5s, sys 20.1s, output queue size 635
progress 75% @chr16:42000001, elapsed 56.0s, est remaining 18.7s, peak mem 8446MB, user 1663.9s, sys 21.1s, output queue size 461
progress 80% @chr17:68000001, elapsed 62.9s, est remaining 15.7s, peak mem 8508MB, user 1842.3s, sys 22.0s, output queue size 623
progress 85% @chr19:45000001, elapsed 68.7s, est remaining 12.1s, peak mem 8508MB, user 2039.2s, sys 23.2s, output queue size 785
progress 90% @chrX:38000001, elapsed 72.5s, est remaining 8.1s, peak mem 8508MB, user 2133.5s, sys 23.9s, output queue size 947
progress 95% @chrY:54000001, elapsed 74.7s, est remaining 3.9s, peak mem 8653MB, user 2233.0s, sys 24.5s, output queue size 675
progress 100% @chr15:88000001, elapsed 85.9s, est remaining 0.0s, peak mem 8653MB, user 2354.7s, sys 25.5s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 71204379079
reads: 1300983781
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1088.789 user 22.292 sys 1110.326 real
done: 1 calls 0.035 user 0.030 sys 0.065 real
exec_no_coor: 1 calls 0.010 user 0.000 sys 0.016 real
execute: 1 calls 0.007 user 0.001 sys 85.889 real
idle: 336 calls 0.115 user 0.001 sys 313.431 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9073606656 mem 2355.821 user 25.629 sys 87.198 real