cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_00H-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_00H-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_00H-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_00H-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 39.2s, est remaining 745.1s, peak mem 6529MB, user 952.6s, sys 10.6s, output queue size 52
progress 10% @chr2:90000001, elapsed 68.6s, est remaining 617.4s, peak mem 9647MB, user 1922.6s, sys 14.8s, output queue size 48
progress 15% @chr2:211000001, elapsed 103.2s, est remaining 584.7s, peak mem 12111MB, user 2888.0s, sys 18.7s, output queue size 203
progress 20% @chr3:72000001, elapsed 133.0s, est remaining 532.2s, peak mem 12340MB, user 3783.6s, sys 21.9s, output queue size 364
progress 25% @chr4:83000001, elapsed 158.6s, est remaining 475.7s, peak mem 12445MB, user 4629.8s, sys 26.9s, output queue size 302
progress 30% @chr5:106000001, elapsed 178.9s, est remaining 417.4s, peak mem 12570MB, user 5202.8s, sys 29.4s, output queue size 464
progress 35% @chr6:52000001, elapsed 207.3s, est remaining 385.0s, peak mem 12611MB, user 5986.2s, sys 32.3s, output queue size 625
progress 40% @chr7:65000001, elapsed 239.8s, est remaining 359.7s, peak mem 13118MB, user 6931.0s, sys 35.7s, output queue size 197
progress 45% @chr8:74000001, elapsed 273.8s, est remaining 334.6s, peak mem 13268MB, user 8035.5s, sys 40.0s, output queue size 204
progress 50% @chr8:143000001, elapsed 302.4s, est remaining 302.4s, peak mem 13434MB, user 8785.7s, sys 42.8s, output queue size 366
progress 55% @chr10:118000001, elapsed 337.0s, est remaining 275.7s, peak mem 13438MB, user 9896.8s, sys 47.0s, output queue size 348
progress 60% @chr11:117000001, elapsed 373.9s, est remaining 249.3s, peak mem 13438MB, user 10999.2s, sys 50.6s, output queue size 510
progress 65% @chr12:106000001, elapsed 408.5s, est remaining 220.0s, peak mem 13665MB, user 11935.2s, sys 53.9s, output queue size 672
progress 70% @chr13:102000001, elapsed 429.9s, est remaining 184.3s, peak mem 13668MB, user 12821.9s, sys 57.0s, output queue size 299
progress 75% @chr16:42000001, elapsed 468.1s, est remaining 156.0s, peak mem 13668MB, user 13835.1s, sys 60.7s, output queue size 461
progress 80% @chr18:25000001, elapsed 526.2s, est remaining 131.6s, peak mem 13871MB, user 15396.3s, sys 66.0s, output queue size 623
progress 85% @chr20:9000001, elapsed 575.5s, est remaining 101.6s, peak mem 13871MB, user 17167.0s, sys 71.7s, output queue size 351
progress 90% @chrX:36000001, elapsed 606.3s, est remaining 67.4s, peak mem 13871MB, user 18075.8s, sys 75.0s, output queue size 513
progress 95% @chrY:55000001, elapsed 624.0s, est remaining 32.8s, peak mem 14007MB, user 18577.4s, sys 76.9s, output queue size 675
progress 100% @chr22:23000001, elapsed 666.7s, est remaining 0.0s, peak mem 14007MB, user 19364.8s, sys 80.0s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 74522953788
output file size: 113818812555
reads: 1364658919
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.025 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.029 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1596.903 user 22.939 sys 1651.547 real
done: 1 calls 0.528 user 0.318 sys 0.849 real
exec_no_coor: 1 calls 0.005 user 0.012 sys 0.017 real
execute: 1 calls 0.007 user 0.000 sys 667.858 real
fetch: 3219323 calls 88.655 user 0.464 sys 123.030 real
fetch_reads: 3219322 calls 313.529 user 1.268 sys 319.490 real
fetch_ref: 2110067 calls 7.555 user 1.317 sys 9.537 real
fetch_vcf: 2110067 calls 95.143 user 1.672 sys 101.100 real
idle: 47436 calls 21.199 user 0.227 sys 1011.841 real
init: 1 calls 0.001 user 0.000 sys 0.035 real
update: 2484326 calls 4375.677 user 4.617 sys 4525.948 real
write: 3219323 calls 14863.692 user 42.519 sys 15026.262 real
overall: 14687649792 mem 19403.929 user 114.176 sys 670.370 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_00H-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_00H-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_00H-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.038 user 0.012 sys 0.044 real
done: 1 calls 0.066 user 0.014 sys 0.080 real
idle: 61 calls 0.002 user 0.000 sys 31.296 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.090 user 0.040 sys 1.053 real