Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e9571789bbdcd9e941142738b3f8ea/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fd9d16d5f12b5a7d5c9a20f5f532db/659_bR4-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/fd9d16d5f12b5a7d5c9a20f5f532db/659_bR4-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e9571789bbdcd9e941142738b3f8ea/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_bR4-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_bR4-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 5.0s, est remaining 95.8s, peak mem 4997MB, user 115.5s, sys 3.6s, output queue size 146
progress 10% @chr2:94000001, elapsed 9.8s, est remaining 87.8s, peak mem 6774MB, user 256.6s, sys 6.1s, output queue size 96
progress 15% @chr3:13000001, elapsed 14.5s, est remaining 82.1s, peak mem 10126MB, user 391.9s, sys 8.1s, output queue size 203
progress 20% @chr3:174000001, elapsed 18.5s, est remaining 74.0s, peak mem 10515MB, user 530.6s, sys 12.0s, output queue size 174
progress 25% @chr4:103000001, elapsed 21.9s, est remaining 65.6s, peak mem 10515MB, user 632.0s, sys 13.0s, output queue size 302
progress 30% @chr5:75000001, elapsed 24.9s, est remaining 58.1s, peak mem 10515MB, user 723.1s, sys 13.8s, output queue size 464
progress 35% @chr6:86000001, elapsed 28.7s, est remaining 53.3s, peak mem 10709MB, user 832.3s, sys 14.6s, output queue size 625
progress 40% @chr7:65000001, elapsed 33.1s, est remaining 49.6s, peak mem 10981MB, user 951.6s, sys 15.7s, output queue size 786
progress 45% @chr8:82000001, elapsed 38.7s, est remaining 47.3s, peak mem 11333MB, user 1100.1s, sys 16.8s, output queue size 948
progress 50% @chr7:152000001, elapsed 43.3s, est remaining 43.3s, peak mem 11864MB, user 1250.3s, sys 18.0s, output queue size 366
progress 55% @chr10:104000001, elapsed 48.2s, est remaining 39.5s, peak mem 11864MB, user 1394.3s, sys 19.0s, output queue size 527
progress 60% @chr12:2000001, elapsed 52.8s, est remaining 35.2s, peak mem 11864MB, user 1540.3s, sys 20.1s, output queue size 689
progress 65% @chr12:106000001, elapsed 58.4s, est remaining 31.4s, peak mem 11864MB, user 1683.3s, sys 21.0s, output queue size 851
progress 70% @chr14:35000001, elapsed 61.5s, est remaining 26.4s, peak mem 11864MB, user 1790.7s, sys 21.8s, output queue size 833
progress 75% @chr16:42000001, elapsed 66.6s, est remaining 22.2s, peak mem 11987MB, user 1929.8s, sys 22.8s, output queue size 995
progress 80% @chr18:9000001, elapsed 73.8s, est remaining 18.4s, peak mem 12014MB, user 2130.3s, sys 24.1s, output queue size 1157
progress 85% @chr19:42000001, elapsed 81.0s, est remaining 14.3s, peak mem 12060MB, user 2389.5s, sys 25.8s, output queue size 785
progress 90% @chrX:38000001, elapsed 85.0s, est remaining 9.4s, peak mem 12423MB, user 2516.1s, sys 26.7s, output queue size 947
progress 95% @chrY:54000001, elapsed 87.8s, est remaining 4.6s, peak mem 12500MB, user 2628.3s, sys 27.8s, output queue size 675
progress 100% @chr22:23000001, elapsed 96.1s, est remaining 0.0s, peak mem 12500MB, user 2753.0s, sys 28.7s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 83203675103
reads: 1632923217
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1292.229 user 24.591 sys 1316.943 real
done: 1 calls 0.029 user 0.049 sys 0.079 real
exec_no_coor: 1 calls 0.000 user 0.010 sys 0.013 real
execute: 1 calls 0.003 user 0.003 sys 96.147 real
idle: 254 calls 0.135 user 0.001 sys 229.114 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 13107425280 mem 2754.061 user 28.944 sys 97.491 real