File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/8fd65ed4be82abf7aced1ef2440d0b/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (1136_5L2-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/3d7183a6bbf0c537335f878f9606b1/1136_5L2-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/74a693035e5f178f528f44977538ba/1136_5L2-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/8fd65ed4be82abf7aced1ef2440d0b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/9fe8485bba80ef951993098c216858/1136_5L2-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/de029da1e37dd99f790c67fec8298e/1136_5L2-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/18ac25f1510b392a8056c3046ef113/1136_5L2-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/eb5741651ce4eb38aa84eca50218c4/1136_5L2-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/8fd65ed4be82abf7aced1ef2440d0b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/ead929ea80e71c7bbcf7a735a0e873/1136_5L2-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/fa49463a4997f580e78eff544e463c/1136_5L2-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory