cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo AlignmentStat 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.sentieon.insert_size_metrics --algo QualDistribution 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:154000001, elapsed 8.4s, est remaining 159.9s, peak mem 2836MB, user 192.6s, sys 2.5s, output queue size 146
progress 10% @chr1:243000001, elapsed 15.4s, est remaining 138.9s, peak mem 4353MB, user 408.3s, sys 4.7s, output queue size 166
progress 15% @chr2:197000001, elapsed 22.5s, est remaining 127.4s, peak mem 5043MB, user 640.1s, sys 6.7s, output queue size 161
progress 20% @chr3:178000001, elapsed 28.7s, est remaining 114.7s, peak mem 5043MB, user 818.8s, sys 7.7s, output queue size 283
progress 25% @chr4:129000001, elapsed 34.0s, est remaining 102.1s, peak mem 5043MB, user 1003.7s, sys 8.8s, output queue size 302
progress 30% @chr5:83000001, elapsed 38.2s, est remaining 89.1s, peak mem 5224MB, user 1113.2s, sys 9.4s, output queue size 464
progress 35% @chr6:56000001, elapsed 44.7s, est remaining 83.0s, peak mem 5350MB, user 1280.7s, sys 10.2s, output queue size 625
progress 40% @chr7:48000001, elapsed 52.0s, est remaining 78.0s, peak mem 5683MB, user 1490.7s, sys 11.1s, output queue size 786
progress 45% @chr8:83000001, elapsed 60.2s, est remaining 73.6s, peak mem 5838MB, user 1777.8s, sys 11.8s, output queue size 204
progress 50% @chr9:102000001, elapsed 66.8s, est remaining 66.8s, peak mem 6101MB, user 1949.0s, sys 12.5s, output queue size 366
progress 55% @chr10:103000001, elapsed 75.3s, est remaining 61.6s, peak mem 6395MB, user 2193.7s, sys 13.5s, output queue size 485
progress 60% @chr11:134000001, elapsed 83.3s, est remaining 55.5s, peak mem 6395MB, user 2455.2s, sys 14.2s, output queue size 510
progress 65% @chr13:24000001, elapsed 91.5s, est remaining 49.2s, peak mem 6471MB, user 2676.9s, sys 14.9s, output queue size 672
progress 70% @chr14:35000001, elapsed 96.5s, est remaining 41.4s, peak mem 6496MB, user 2820.1s, sys 15.4s, output queue size 833
progress 75% @chr16:42000001, elapsed 106.3s, est remaining 35.4s, peak mem 6496MB, user 3124.8s, sys 16.3s, output queue size 995
progress 80% @chr18:10000001, elapsed 119.5s, est remaining 29.9s, peak mem 6496MB, user 3534.0s, sys 17.3s, output queue size 623
progress 85% @chr20:23000001, elapsed 132.6s, est remaining 23.4s, peak mem 6506MB, user 3936.1s, sys 18.2s, output queue size 785
progress 90% @chrX:30000001, elapsed 140.7s, est remaining 15.6s, peak mem 6525MB, user 4244.0s, sys 18.9s, output queue size 513
progress 95% @chrY:54000001, elapsed 146.5s, est remaining 7.7s, peak mem 6555MB, user 4383.1s, sys 19.4s, output queue size 675
progress 100% @chrX:67000001, elapsed 165.8s, est remaining 0.0s, peak mem 6555MB, user 4652.5s, sys 20.1s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 50938789543
reads: 986308211
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 811.585 user 15.800 sys 830.506 real
done: 1 calls 0.033 user 0.000 sys 0.039 real
exec_no_coor: 1 calls 0.000 user 0.004 sys 0.012 real
execute: 1 calls 0.005 user 0.002 sys 165.961 real
idle: 531 calls 0.171 user 0.000 sys 502.110 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 6874259456 mem 4654.493 user 20.408 sys 167.269 real