File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/738b10413b37d6316e89002494539f/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:189000001, elapsed 3.8s, est remaining 71.5s, peak mem 2292MB, user 68.8s, sys 1.4s, output queue size 42
progress 10% @chr1:149000001, elapsed 8.8s, est remaining 79.1s, peak mem 4131MB, user 226.1s, sys 3.5s, output queue size 173
progress 15% @chr2:224000001, elapsed 12.1s, est remaining 68.3s, peak mem 4615MB, user 340.8s, sys 5.0s, output queue size 328
progress 20% @chr3:149000001, elapsed 14.8s, est remaining 59.1s, peak mem 4714MB, user 423.8s, sys 5.8s, output queue size 489
progress 25% @chr4:129000001, elapsed 17.1s, est remaining 51.3s, peak mem 4794MB, user 484.9s, sys 6.2s, output queue size 650
progress 30% @chr5:75000001, elapsed 18.7s, est remaining 43.7s, peak mem 4794MB, user 554.2s, sys 6.8s, output queue size 464
progress 35% @chr6:82000001, elapsed 22.3s, est remaining 41.4s, peak mem 5453MB, user 649.7s, sys 7.6s, output queue size 106
progress 40% @chr7:41000001, elapsed 25.6s, est remaining 38.3s, peak mem 5825MB, user 746.9s, sys 8.4s, output queue size 197
progress 45% @chr8:72000001, elapsed 29.1s, est remaining 35.6s, peak mem 6048MB, user 846.3s, sys 9.3s, output queue size 357
progress 50% @chr9:91000001, elapsed 32.7s, est remaining 32.7s, peak mem 6331MB, user 973.1s, sys 10.4s, output queue size 187
progress 55% @chr10:115000001, elapsed 37.0s, est remaining 30.3s, peak mem 6749MB, user 1092.0s, sys 11.3s, output queue size 236
progress 60% @chr12:2000001, elapsed 40.2s, est remaining 26.8s, peak mem 6790MB, user 1192.3s, sys 11.9s, output queue size 312
progress 65% @chr12:111000001, elapsed 43.8s, est remaining 23.6s, peak mem 6901MB, user 1302.8s, sys 12.6s, output queue size 474
progress 70% @chr14:82000001, elapsed 46.5s, est remaining 19.9s, peak mem 6927MB, user 1395.7s, sys 13.1s, output queue size 299
progress 75% @chr16:42000001, elapsed 50.3s, est remaining 16.8s, peak mem 6927MB, user 1515.6s, sys 13.8s, output queue size 118
progress 80% @chr18:25000001, elapsed 55.5s, est remaining 13.9s, peak mem 6927MB, user 1655.7s, sys 14.5s, output queue size 189
progress 85% @chr20:3000001, elapsed 60.9s, est remaining 10.7s, peak mem 6967MB, user 1830.8s, sys 15.3s, output queue size 351
progress 90% @chr22:39000001, elapsed 64.4s, est remaining 7.2s, peak mem 7058MB, user 1955.1s, sys 16.0s, output queue size 78
progress 95% @chrY:53000001, elapsed 66.8s, est remaining 3.5s, peak mem 7058MB, user 2024.5s, sys 16.4s, output queue size 240
progress 100% @chr22:23000001, elapsed 72.9s, est remaining 0.0s, peak mem 7058MB, user 2084.7s, sys 16.8s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 49280866937
reads: 991312774
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 802.966 user 14.339 sys 818.359 real
done: 1 calls 0.324 user 0.028 sys 0.360 real
exec_no_coor: 1 calls 0.005 user 0.011 sys 0.023 real
execute: 1 calls 0.006 user 0.003 sys 72.951 real
idle: 221 calls 0.111 user 0.011 sys 191.428 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7400931328 mem 2086.923 user 17.337 sys 74.735 real