Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Read1 before filtering:
total reads: 90120289
total bases: 13608163639
Q20 bases: 13255530951(97.4087%)
Q30 bases: 12579461570(92.4406%)
Q40 bases: 12579461570(92.4406%)
Read2 before filtering:
total reads: 90120289
total bases: 13608163639
Q20 bases: 13101723857(96.2784%)
Q30 bases: 12221976682(89.8136%)
Q40 bases: 12221976682(89.8136%)
Read1 after filtering:
total reads: 89147512
total bases: 12751935441
Q20 bases: 12476629426(97.8411%)
Q30 bases: 11883641707(93.1909%)
Q40 bases: 11883641707(93.1909%)
Read2 after filtering:
total reads: 89147512
total bases: 12753340399
Q20 bases: 12367060830(96.9711%)
Q30 bases: 11606079990(91.0042%)
Q40 bases: 11606079990(91.0042%)
Filtering result:
reads passed filter: 178295024
reads failed due to low quality: 1934600
reads failed due to too many N: 9218
reads failed due to too short: 1736
reads with adapter trimmed: 41211038
bases trimmed due to adapters: 1422163050
Duplication rate: 10.0528%
Insert size peak (evaluated by paired-end reads): 152
JSON report: 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.html
fastp --in1 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L005_R1_001.fastq.gz --in2 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L005_R2_001.fastq.gz --out1 1029_HTI-T1-TDNA-1_A23MHWWLT4_1/1029_HTI-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_HTI-T1-TDNA-1_A23MHWWLT4_1/1029_HTI-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4
fastp v1.0.1, time used: 968 seconds