cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5Q-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_5Q-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:120005298, elapsed 8.7s, est remaining 165.2s, peak mem 5513MB, user 227.3s, sys 5.5s, output queue size 197
progress 10% @chr2:21037958, elapsed 16.4s, est remaining 147.4s, peak mem 6230MB, user 433.1s, sys 8.2s, output queue size 651
progress 15% @chr2:189720619, elapsed 25.2s, est remaining 142.9s, peak mem 7005MB, user 668.1s, sys 10.8s, output queue size 243
progress 20% @chr3:98469577, elapsed 33.9s, est remaining 135.6s, peak mem 7257MB, user 899.3s, sys 12.7s, output queue size 421
progress 25% @chr4:88504232, elapsed 43.5s, est remaining 130.5s, peak mem 7879MB, user 1159.6s, sys 14.7s, output queue size 99
progress 30% @chr5:147640704, elapsed 49.6s, est remaining 115.7s, peak mem 7988MB, user 1316.4s, sys 15.6s, output queue size 208
progress 35% @chr6:132297153, elapsed 59.2s, est remaining 109.9s, peak mem 8021MB, user 1572.4s, sys 17.6s, output queue size 638
progress 40% @chr7:102248412, elapsed 68.0s, est remaining 102.0s, peak mem 8366MB, user 1801.8s, sys 19.5s, output queue size 1457
progress 45% @chr9:916763, elapsed 80.6s, est remaining 98.5s, peak mem 10187MB, user 2154.9s, sys 22.1s, output queue size 20
progress 50% @chr10:32009016, elapsed 91.9s, est remaining 91.9s, peak mem 10484MB, user 2463.5s, sys 24.4s, output queue size 100
progress 55% @chr11:48130459, elapsed 98.2s, est remaining 80.4s, peak mem 10484MB, user 2628.5s, sys 25.5s, output queue size 18
progress 60% @chr12:26064498, elapsed 107.0s, est remaining 71.3s, peak mem 10484MB, user 2858.4s, sys 27.2s, output queue size 807
progress 65% @chr13:49197982, elapsed 115.3s, est remaining 62.1s, peak mem 10484MB, user 3088.7s, sys 29.0s, output queue size 544
progress 70% @chr15:43085984, elapsed 122.1s, est remaining 52.3s, peak mem 10484MB, user 3268.2s, sys 30.4s, output queue size 455
progress 75% @chr16:30961267, elapsed 132.3s, est remaining 44.1s, peak mem 10484MB, user 3547.9s, sys 32.2s, output queue size 30
progress 80% @chr17:40339002, elapsed 140.9s, est remaining 35.2s, peak mem 10484MB, user 3784.5s, sys 33.8s, output queue size 684
progress 85% @chr19:5693298, elapsed 150.1s, est remaining 26.5s, peak mem 10484MB, user 4033.0s, sys 35.5s, output queue size 405
progress 90% @chr19:55517224, elapsed 158.7s, est remaining 17.6s, peak mem 10484MB, user 4267.3s, sys 37.0s, output queue size 93
progress 95% @chr22:36504515, elapsed 167.6s, est remaining 8.8s, peak mem 10484MB, user 4508.8s, sys 38.9s, output queue size 2
progress 100% @chr6_GL000251v2_alt:3946951, elapsed 173.2s, est remaining 0.0s, peak mem 10484MB, user 4654.6s, sys 39.9s, output queue size 6
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 62212255172
reads: 1210780814
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2344.915 user 31.718 sys 2459.379 real
done: 1 calls 0.336 user 0.358 sys 0.701 real
execute: 1 calls 0.004 user 0.002 sys 173.195 real
fetch_reads: 208647 calls 217.182 user 0.357 sys 223.968 real
fetch_ref: 207322 calls 1.017 user 1.098 sys 2.134 real
fetch_vcf: 207322 calls 80.928 user 2.276 sys 85.863 real
idle: 130 calls 0.363 user 0.005 sys 32.996 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 483989 calls 2397.039 user 3.111 sys 2470.443 real
overall: 10994073600 mem 5232.753 user 41.457 sys 174.766 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory