File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/2fe644790c1a8c757ac6edc5ed9724/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 4.4s, est remaining 83.9s, peak mem 3313MB, user 99.5s, sys 2.8s, output queue size 150
progress 10% @chr1:226000001, elapsed 8.2s, est remaining 73.5s, peak mem 4848MB, user 219.6s, sys 4.4s, output queue size 117
progress 15% @chr2:237000001, elapsed 12.6s, est remaining 71.6s, peak mem 5976MB, user 352.4s, sys 6.6s, output queue size 161
progress 20% @chr3:160000001, elapsed 16.1s, est remaining 64.2s, peak mem 6001MB, user 454.8s, sys 7.9s, output queue size 283
progress 25% @chr4:87000001, elapsed 19.1s, est remaining 57.2s, peak mem 6130MB, user 557.0s, sys 8.9s, output queue size 302
progress 30% @chr5:107000001, elapsed 21.5s, est remaining 50.2s, peak mem 6256MB, user 622.3s, sys 9.5s, output queue size 464
progress 35% @chr6:70000001, elapsed 25.1s, est remaining 46.6s, peak mem 6304MB, user 724.8s, sys 10.3s, output queue size 625
progress 40% @chr7:67000001, elapsed 29.2s, est remaining 43.7s, peak mem 6413MB, user 859.7s, sys 11.4s, output queue size 194
progress 45% @chr8:31000001, elapsed 34.1s, est remaining 41.7s, peak mem 6611MB, user 1003.2s, sys 12.3s, output queue size 204
progress 50% @chr9:81000001, elapsed 38.1s, est remaining 38.1s, peak mem 7082MB, user 1104.1s, sys 13.0s, output queue size 366
progress 55% @chr10:103000001, elapsed 42.8s, est remaining 35.0s, peak mem 7422MB, user 1233.5s, sys 13.8s, output queue size 527
progress 60% @chr11:134000001, elapsed 47.5s, est remaining 31.7s, peak mem 7422MB, user 1391.7s, sys 14.9s, output queue size 510
progress 65% @chr13:33000001, elapsed 52.2s, est remaining 28.1s, peak mem 7496MB, user 1524.7s, sys 16.1s, output queue size 672
progress 70% @chr14:82000001, elapsed 55.2s, est remaining 23.6s, peak mem 7513MB, user 1613.9s, sys 16.7s, output queue size 833
progress 75% @chr15:89000001, elapsed 60.4s, est remaining 20.1s, peak mem 7556MB, user 1801.1s, sys 18.1s, output queue size 461
progress 80% @chr18:9000001, elapsed 67.5s, est remaining 16.9s, peak mem 7679MB, user 1993.5s, sys 19.4s, output queue size 623
progress 85% @chr19:47000001, elapsed 74.1s, est remaining 13.1s, peak mem 7679MB, user 2205.4s, sys 20.5s, output queue size 785
progress 90% @chr20:32000001, elapsed 79.0s, est remaining 8.8s, peak mem 7679MB, user 2373.3s, sys 21.8s, output queue size 513
progress 95% @chrY:52000001, elapsed 82.6s, est remaining 4.3s, peak mem 7730MB, user 2457.9s, sys 22.5s, output queue size 675
progress 100% @chr22:23000001, elapsed 92.1s, est remaining 0.0s, peak mem 7730MB, user 2604.3s, sys 23.7s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 74334244054
reads: 1460016157
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1169.469 user 20.777 sys 1190.610 real
done: 1 calls 0.025 user 0.018 sys 0.047 real
exec_no_coor: 1 calls 0.008 user 0.016 sys 0.045 real
execute: 1 calls 0.003 user 0.001 sys 92.144 real
idle: 294 calls 0.147 user 0.001 sys 257.635 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8106201088 mem 2605.205 user 23.916 sys 93.400 real