File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/71e6a0a34b9b3b6beb8558b8b518ee/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 91773624
total bases: 13857817224
Q20 bases: 13522317985(97.579%)
Q30 bases: 12877274583(92.9243%)
Q40 bases: 12877274583(92.9243%)

Read2 before filtering:
total reads: 91773624
total bases: 13857817224
Q20 bases: 13384543886(96.5848%)
Q30 bases: 12557499246(90.6167%)
Q40 bases: 12557499246(90.6167%)

Read1 after filtering:
total reads: 90822129
total bases: 12980102480
Q20 bases: 12720592215(98.0007%)
Q30 bases: 12157318667(93.6612%)
Q40 bases: 12157318667(93.6612%)

Read2 after filtering:
total reads: 90822129
total bases: 12981532520
Q20 bases: 12624879423(97.2526%)
Q30 bases: 11913273784(91.7709%)
Q40 bases: 11913273784(91.7709%)

Filtering result:
reads passed filter: 181644258
reads failed due to low quality: 1890698
reads failed due to too many N: 10400
reads failed due to too short: 1892
reads with adapter trimmed: 42600457
bases trimmed due to adapters: 1471556879

Duplication rate: 10.383%

Insert size peak (evaluated by paired-end reads): 152

JSON report: 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L004_R1_001.fastq.gz --in2 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L004_R2_001.fastq.gz --out1 1029_HTI-T1-TDNA-1_A23MHWWLT4_1/1029_HTI-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_HTI-T1-TDNA-1_A23MHWWLT4_1/1029_HTI-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 577 seconds