File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/b5b15434237a9c0d7aaacefdd963d0/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_dm4-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_dm4-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 3.6s, est remaining 68.9s, peak mem 2158MB, user 91.4s, sys 2.1s, output queue size 44
progress 10% @chr2:90000001, elapsed 6.4s, est remaining 57.6s, peak mem 2681MB, user 179.4s, sys 3.4s, output queue size 48
progress 15% @chr2:201000001, elapsed 9.7s, est remaining 55.0s, peak mem 3451MB, user 276.1s, sys 5.3s, output queue size 122
progress 20% @chr3:176000001, elapsed 12.6s, est remaining 50.5s, peak mem 3517MB, user 363.9s, sys 6.3s, output queue size 141
progress 25% @chr4:132000001, elapsed 15.2s, est remaining 45.6s, peak mem 3724MB, user 444.8s, sys 7.1s, output queue size 302
progress 30% @chr5:107000001, elapsed 17.3s, est remaining 40.4s, peak mem 3880MB, user 506.4s, sys 7.6s, output queue size 464
progress 35% @chr6:41000001, elapsed 20.2s, est remaining 37.5s, peak mem 4010MB, user 590.0s, sys 8.7s, output queue size 625
progress 40% @chr7:66000001, elapsed 23.3s, est remaining 35.0s, peak mem 4145MB, user 682.5s, sys 9.3s, output queue size 195
progress 45% @chr8:72000001, elapsed 26.6s, est remaining 32.5s, peak mem 4363MB, user 786.9s, sys 10.3s, output queue size 204
progress 50% @chr9:88000001, elapsed 29.4s, est remaining 29.4s, peak mem 4517MB, user 861.7s, sys 11.0s, output queue size 366
progress 55% @chr10:103000001, elapsed 32.8s, est remaining 26.8s, peak mem 4526MB, user 968.8s, sys 11.8s, output queue size 348
progress 60% @chr11:117000001, elapsed 35.9s, est remaining 24.0s, peak mem 4548MB, user 1067.3s, sys 12.5s, output queue size 510
progress 65% @chr12:106000001, elapsed 39.4s, est remaining 21.2s, peak mem 4548MB, user 1159.9s, sys 13.3s, output queue size 672
progress 70% @chr13:28000001, elapsed 41.5s, est remaining 17.8s, peak mem 4548MB, user 1237.6s, sys 13.7s, output queue size 833
progress 75% @chr16:41000001, elapsed 45.0s, est remaining 15.0s, peak mem 4548MB, user 1337.9s, sys 14.5s, output queue size 461
progress 80% @chr18:9000001, elapsed 49.8s, est remaining 12.5s, peak mem 4588MB, user 1470.7s, sys 15.4s, output queue size 623
progress 85% @chr19:55000001, elapsed 53.8s, est remaining 9.5s, peak mem 4588MB, user 1622.8s, sys 16.3s, output queue size 351
progress 90% @chrX:32000001, elapsed 56.7s, est remaining 6.3s, peak mem 4590MB, user 1702.7s, sys 16.8s, output queue size 513
progress 95% @chrY:53000001, elapsed 58.5s, est remaining 3.1s, peak mem 4611MB, user 1758.9s, sys 17.3s, output queue size 675
progress 100% @chr22:23000001, elapsed 62.9s, est remaining 0.0s, peak mem 4611MB, user 1825.3s, sys 17.8s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50881977164
reads: 1106159925
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 837.515 user 14.341 sys 853.476 real
done: 1 calls 0.027 user 0.008 sys 0.038 real
exec_no_coor: 1 calls 0.006 user 0.006 sys 0.017 real
execute: 1 calls 0.006 user 0.003 sys 62.937 real
idle: 148 calls 0.144 user 0.001 sys 136.813 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 4835401728 mem 1826.513 user 17.957 sys 64.172 real