File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/20f5bd50bd985b93599610ffd607e9/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 33134734
total bases: 5003344834
Q20 bases: 4748861142(94.9137%)
Q30 bases: 4483196287(89.604%)
Q40 bases: 4483196287(89.604%)

Read2 before filtering:
total reads: 33134734
total bases: 5003344834
Q20 bases: 4807391618(96.0836%)
Q30 bases: 4532144893(90.5823%)
Q40 bases: 4532144893(90.5823%)

Read1 after filtering:
total reads: 32810593
total bases: 3776066927
Q20 bases: 3711079966(98.279%)
Q30 bases: 3572203533(94.6012%)
Q40 bases: 3572203533(94.6012%)

Read2 after filtering:
total reads: 32810593
total bases: 3778495358
Q20 bases: 3712448471(98.252%)
Q30 bases: 3583854539(94.8487%)
Q40 bases: 3583854539(94.8487%)

Filtering result:
reads passed filter: 65621186
reads failed due to low quality: 639910
reads failed due to too many N: 4986
reads failed due to too short: 3386
reads with adapter trimmed: 49772801
bases trimmed due to adapters: 2363182971

Duplication rate: 5.67048%

Insert size peak (evaluated by paired-end reads): 96

JSON report: 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L006_R1_001.fastq.gz --in2 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_S29_L006_R2_001.fastq.gz --out1 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 250 seconds