File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/c36c46281fae442f7ac0e68fd5581c/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3MV-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_3MV-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 3.6s, est remaining 68.2s, peak mem 3045MB, user 84.5s, sys 3.9s, output queue size 115
progress 10% @chr2:84000001, elapsed 6.6s, est remaining 59.0s, peak mem 4121MB, user 170.3s, sys 5.9s, output queue size 172
progress 15% @chr3:8000001, elapsed 9.3s, est remaining 52.6s, peak mem 5930MB, user 259.9s, sys 7.5s, output queue size 203
progress 20% @chr3:158000001, elapsed 11.8s, est remaining 47.3s, peak mem 6415MB, user 334.8s, sys 9.3s, output queue size 283
progress 25% @chr4:135000001, elapsed 14.1s, est remaining 42.2s, peak mem 6440MB, user 408.1s, sys 10.2s, output queue size 302
progress 30% @chr5:1000001, elapsed 15.9s, est remaining 37.1s, peak mem 6522MB, user 454.7s, sys 10.6s, output queue size 464
progress 35% @chr6:81000001, elapsed 18.8s, est remaining 34.8s, peak mem 6852MB, user 536.1s, sys 11.4s, output queue size 625
progress 40% @chr7:67000001, elapsed 22.4s, est remaining 33.6s, peak mem 7658MB, user 643.1s, sys 12.6s, output queue size 195
progress 45% @chr8:74000001, elapsed 26.0s, est remaining 31.8s, peak mem 7699MB, user 751.3s, sys 13.8s, output queue size 356
progress 50% @chr9:34000001, elapsed 28.8s, est remaining 28.8s, peak mem 7699MB, user 835.5s, sys 14.7s, output queue size 366
progress 55% @chr10:99000001, elapsed 32.0s, est remaining 26.2s, peak mem 8253MB, user 936.2s, sys 15.6s, output queue size 348
progress 60% @chr11:130000001, elapsed 35.9s, est remaining 24.0s, peak mem 8545MB, user 1049.7s, sys 16.6s, output queue size 510
progress 65% @chr13:26000001, elapsed 39.1s, est remaining 21.1s, peak mem 10514MB, user 1136.7s, sys 17.3s, output queue size 672
progress 70% @chr14:71000001, elapsed 41.0s, est remaining 17.6s, peak mem 11718MB, user 1211.5s, sys 18.1s, output queue size 738
progress 75% @chr16:42000001, elapsed 44.6s, est remaining 14.9s, peak mem 11765MB, user 1307.9s, sys 19.0s, output queue size 900
progress 80% @chr18:29000001, elapsed 50.5s, est remaining 12.6s, peak mem 12343MB, user 1449.2s, sys 20.1s, output queue size 1062
progress 85% @chr19:35000001, elapsed 55.7s, est remaining 9.8s, peak mem 13171MB, user 1607.5s, sys 21.6s, output queue size 1224
progress 90% @chrX:42000001, elapsed 59.4s, est remaining 6.6s, peak mem 13171MB, user 1741.2s, sys 22.8s, output queue size 1386
progress 95% @chrY:53000001, elapsed 62.4s, est remaining 3.3s, peak mem 13679MB, user 1808.5s, sys 23.4s, output queue size 1548
progress 100% @chr8:127000001, elapsed 118.8s, est remaining 0.0s, peak mem 13679MB, user 2022.1s, sys 26.5s, output queue size 4972
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 66368244287
reads: 1256320583
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1017.163 user 23.373 sys 1041.544 real
done: 1 calls 0.000 user 0.002 sys 0.003 real
exec_no_coor: 1 calls 0.000 user 0.028 sys 0.042 real
execute: 1 calls 0.004 user 0.002 sys 118.854 real
idle: 1688 calls 0.217 user 0.004 sys 1664.521 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 14343643136 mem 2022.912 user 27.065 sys 120.410 real