cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_dm4-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 659_dm4-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119967393, elapsed 6.6s, est remaining 125.3s, peak mem 4251MB, user 178.2s, sys 3.8s, output queue size 177
progress 10% @chr2:21001730, elapsed 12.6s, est remaining 113.6s, peak mem 4720MB, user 344.1s, sys 5.7s, output queue size 652
progress 15% @chr2:189853939, elapsed 19.7s, est remaining 111.6s, peak mem 5436MB, user 540.3s, sys 7.5s, output queue size 289
progress 20% @chr3:98585441, elapsed 26.7s, est remaining 106.7s, peak mem 5745MB, user 734.8s, sys 9.2s, output queue size 414
progress 25% @chr4:88486115, elapsed 32.8s, est remaining 98.4s, peak mem 5746MB, user 902.4s, sys 10.5s, output queue size 87
progress 30% @chr5:147628751, elapsed 38.3s, est remaining 89.4s, peak mem 5803MB, user 1052.3s, sys 11.6s, output queue size 195
progress 35% @chr6:131700469, elapsed 45.5s, est remaining 84.4s, peak mem 5993MB, user 1249.4s, sys 13.1s, output queue size 630
progress 40% @chr7:128844658, elapsed 52.4s, est remaining 78.6s, peak mem 6243MB, user 1439.9s, sys 14.4s, output queue size 541
progress 45% @chr9:420401, elapsed 59.4s, est remaining 72.5s, peak mem 6407MB, user 1635.6s, sys 15.9s, output queue size 35
progress 50% @chr10:32016829, elapsed 66.0s, est remaining 66.0s, peak mem 6425MB, user 1820.2s, sys 17.3s, output queue size 97
progress 55% @chr11:48136039, elapsed 72.0s, est remaining 58.9s, peak mem 6425MB, user 1983.6s, sys 18.5s, output queue size 16
progress 60% @chr12:22519115, elapsed 78.5s, est remaining 52.3s, peak mem 6425MB, user 2162.1s, sys 19.6s, output queue size 700
progress 65% @chr13:48411389, elapsed 85.0s, est remaining 45.8s, peak mem 6425MB, user 2342.7s, sys 20.6s, output queue size 78
progress 70% @chr15:43149029, elapsed 91.0s, est remaining 39.0s, peak mem 6425MB, user 2507.9s, sys 21.5s, output queue size 454
progress 75% @chr16:30963433, elapsed 97.5s, est remaining 32.5s, peak mem 6425MB, user 2689.5s, sys 22.7s, output queue size 31
progress 80% @chr17:40339002, elapsed 104.5s, est remaining 26.1s, peak mem 6425MB, user 2886.7s, sys 24.2s, output queue size 672
progress 85% @chr19:5693552, elapsed 110.7s, est remaining 19.5s, peak mem 6425MB, user 3057.7s, sys 25.4s, output queue size 405
progress 90% @chr19:55613619, elapsed 116.3s, est remaining 12.9s, peak mem 6425MB, user 3215.6s, sys 26.4s, output queue size 86
progress 95% @chr22:36504098, elapsed 122.8s, est remaining 6.5s, peak mem 6425MB, user 3393.6s, sys 27.7s, output queue size 33
progress 100% @chrY:25622443, elapsed 126.9s, est remaining 0.0s, peak mem 6425MB, user 3505.8s, sys 28.5s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50881977164
reads: 1106159925
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1774.122 user 21.000 sys 1904.608 real
done: 1 calls 0.415 user 0.397 sys 0.817 real
execute: 1 calls 0.003 user 0.011 sys 126.870 real
fetch_reads: 208647 calls 171.652 user 0.280 sys 180.631 real
fetch_ref: 206726 calls 1.290 user 1.017 sys 2.224 real
fetch_vcf: 206726 calls 79.350 user 2.108 sys 86.147 real
idle: 92 calls 0.158 user 0.000 sys 32.590 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 403230 calls 1571.963 user 2.642 sys 1634.807 real
overall: 6737448960 mem 3806.810 user 29.702 sys 128.373 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory