File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/41fbbd522fa82dc1766584a98789c8/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_cVw-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_cVw-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:178000001, elapsed 4.8s, est remaining 91.0s, peak mem 4351MB, user 113.0s, sys 3.5s, output queue size 146
progress 10% @chr2:27000001, elapsed 9.0s, est remaining 80.6s, peak mem 6236MB, user 239.4s, sys 5.8s, output queue size 117
progress 15% @chr3:17000001, elapsed 14.0s, est remaining 79.3s, peak mem 9809MB, user 377.8s, sys 8.0s, output queue size 203
progress 20% @chr3:178000001, elapsed 17.7s, est remaining 70.9s, peak mem 9918MB, user 505.4s, sys 11.1s, output queue size 174
progress 25% @chr3:179000001, elapsed 21.1s, est remaining 63.4s, peak mem 10080MB, user 603.1s, sys 12.0s, output queue size 335
progress 30% @chr5:94000001, elapsed 23.8s, est remaining 55.6s, peak mem 10207MB, user 678.7s, sys 12.8s, output queue size 464
progress 35% @chr6:79000001, elapsed 27.4s, est remaining 50.9s, peak mem 10210MB, user 793.1s, sys 14.1s, output queue size 625
progress 40% @chr7:79000001, elapsed 31.8s, est remaining 47.7s, peak mem 10622MB, user 904.7s, sys 14.8s, output queue size 786
progress 45% @chr8:78000001, elapsed 37.1s, est remaining 45.4s, peak mem 10723MB, user 1057.4s, sys 16.1s, output queue size 948
progress 50% @chr9:102000001, elapsed 41.5s, est remaining 41.5s, peak mem 11201MB, user 1163.0s, sys 17.2s, output queue size 1110
progress 55% @chr10:101000001, elapsed 46.3s, est remaining 37.9s, peak mem 11432MB, user 1348.3s, sys 19.1s, output queue size 527
progress 60% @chr11:69000001, elapsed 50.7s, est remaining 33.8s, peak mem 11432MB, user 1483.4s, sys 20.2s, output queue size 689
progress 65% @chr11:118000001, elapsed 56.0s, est remaining 30.1s, peak mem 11432MB, user 1608.8s, sys 21.1s, output queue size 851
progress 70% @chr14:76000001, elapsed 58.9s, est remaining 25.2s, peak mem 11478MB, user 1721.7s, sys 22.0s, output queue size 833
progress 75% @chr16:41000001, elapsed 64.2s, est remaining 21.4s, peak mem 11478MB, user 1861.8s, sys 22.9s, output queue size 995
progress 80% @chr18:13000001, elapsed 71.2s, est remaining 17.8s, peak mem 11484MB, user 2060.7s, sys 24.3s, output queue size 1157
progress 85% @chr20:48000001, elapsed 78.2s, est remaining 13.8s, peak mem 11484MB, user 2284.5s, sys 25.8s, output queue size 785
progress 90% @chr12:11000001, elapsed 82.2s, est remaining 9.1s, peak mem 11880MB, user 2471.3s, sys 27.0s, output queue size 947
progress 95% @chrY:54000001, elapsed 84.4s, est remaining 4.4s, peak mem 11880MB, user 2530.9s, sys 27.5s, output queue size 675
progress 100% @chr15:88000001, elapsed 95.4s, est remaining 0.0s, peak mem 11880MB, user 2651.8s, sys 28.3s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 79716908892
reads: 1583694629
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1234.500 user 25.104 sys 1262.257 real
done: 1 calls 0.014 user 0.017 sys 0.033 real
exec_no_coor: 1 calls 0.000 user 0.013 sys 0.017 real
execute: 1 calls 0.001 user 0.001 sys 95.438 real
idle: 317 calls 0.136 user 0.001 sys 307.161 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 12457652224 mem 2652.896 user 28.557 sys 96.746 real