File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/1304ff3d6bcf3d8a9de19494bbc3dd/.command.log
Size
1.3 KB
Task
DAQ:BAM_POSTDEDUP_QC:MOSDEPTH (FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/1304ff3d6bcf3d8a9de19494bbc3dd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/1da352571a0470ddf30af8993404ce/FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/1304ff3d6bcf3d8a9de19494bbc3dd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/1da352571a0470ddf30af8993404ce/FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (6 inputs)

[W::hts_idx_load3] The index file is older than the data file: FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.md.bam.bai
ls: cannot access '*.per-base.d4': No such file or directory
ls: cannot access '*.quantized.bed.gz': No such file or directory
ls: cannot access '*.quantized.bed.gz.csi': No such file or directory
ls: cannot access '*.thresholds.bed.gz': No such file or directory
ls: cannot access '*.thresholds.bed.gz.csi': No such file or directory