File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/e51359a21a157b5b35bdbd8cd2c87a/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 4.4s, est remaining 82.8s, peak mem 3287MB, user 103.3s, sys 2.9s, output queue size 145
progress 10% @chr2:90000001, elapsed 7.9s, est remaining 71.1s, peak mem 4443MB, user 213.5s, sys 5.3s, output queue size 117
progress 15% @chr2:197000001, elapsed 12.2s, est remaining 69.2s, peak mem 5802MB, user 345.6s, sys 8.0s, output queue size 122
progress 20% @chr3:167000001, elapsed 15.5s, est remaining 62.0s, peak mem 5970MB, user 442.2s, sys 9.0s, output queue size 283
progress 25% @chr4:135000001, elapsed 18.4s, est remaining 55.2s, peak mem 5985MB, user 536.5s, sys 9.9s, output queue size 302
progress 30% @chr5:99000001, elapsed 20.8s, est remaining 48.5s, peak mem 5994MB, user 602.3s, sys 10.5s, output queue size 464
progress 35% @chr6:81000001, elapsed 24.2s, est remaining 45.0s, peak mem 6213MB, user 698.9s, sys 11.3s, output queue size 625
progress 40% @chr7:67000001, elapsed 28.1s, est remaining 42.1s, peak mem 6353MB, user 826.6s, sys 12.5s, output queue size 194
progress 45% @chr8:70000001, elapsed 32.8s, est remaining 40.1s, peak mem 6645MB, user 963.1s, sys 13.6s, output queue size 204
progress 50% @chr9:81000001, elapsed 36.6s, est remaining 36.6s, peak mem 6898MB, user 1059.6s, sys 14.7s, output queue size 366
progress 55% @chr10:73000001, elapsed 41.2s, est remaining 33.7s, peak mem 7243MB, user 1184.2s, sys 15.8s, output queue size 527
progress 60% @chr11:130000001, elapsed 45.6s, est remaining 30.4s, peak mem 7243MB, user 1338.2s, sys 16.8s, output queue size 510
progress 65% @chr13:33000001, elapsed 50.0s, est remaining 26.9s, peak mem 7306MB, user 1461.4s, sys 17.6s, output queue size 672
progress 70% @chr14:79000001, elapsed 52.9s, est remaining 22.7s, peak mem 7306MB, user 1549.8s, sys 18.3s, output queue size 833
progress 75% @chr16:42000001, elapsed 57.9s, est remaining 19.3s, peak mem 7306MB, user 1722.4s, sys 19.5s, output queue size 461
progress 80% @chr18:9000001, elapsed 64.4s, est remaining 16.1s, peak mem 7504MB, user 1903.8s, sys 20.6s, output queue size 623
progress 85% @chr20:39000001, elapsed 70.7s, est remaining 12.5s, peak mem 7504MB, user 2105.6s, sys 21.9s, output queue size 785
progress 90% @chrX:36000001, elapsed 75.4s, est remaining 8.4s, peak mem 7683MB, user 2255.8s, sys 22.9s, output queue size 513
progress 95% @chrY:52000001, elapsed 78.8s, est remaining 4.1s, peak mem 7683MB, user 2343.5s, sys 23.4s, output queue size 675
progress 100% @chrX:67000001, elapsed 87.0s, est remaining 0.0s, peak mem 7683MB, user 2482.9s, sys 24.1s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 74334244054
reads: 1460016157
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1168.560 user 21.239 sys 1189.348 real
done: 1 calls 0.019 user 0.009 sys 0.032 real
exec_no_coor: 1 calls 0.008 user 0.016 sys 0.046 real
execute: 1 calls 0.002 user 0.001 sys 87.061 real
idle: 260 calls 0.148 user 0.001 sys 222.089 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8056815616 mem 2483.849 user 24.286 sys 88.334 real