cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_5TB-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:146000001, elapsed 45.5s, est remaining 865.3s, peak mem 7789MB, user 1078.8s, sys 10.4s, output queue size 42
progress 10% @chr2:90000001, elapsed 85.3s, est remaining 767.4s, peak mem 11019MB, user 2339.7s, sys 16.7s, output queue size 117
progress 15% @chr2:238000001, elapsed 118.6s, est remaining 671.9s, peak mem 11562MB, user 3409.8s, sys 22.1s, output queue size 122
progress 20% @chr3:174000001, elapsed 150.0s, est remaining 599.9s, peak mem 11562MB, user 4342.9s, sys 25.9s, output queue size 141
progress 25% @chr4:136000001, elapsed 176.4s, est remaining 529.1s, peak mem 11562MB, user 5197.1s, sys 28.9s, output queue size 302
progress 30% @chr5:104000001, elapsed 200.5s, est remaining 467.8s, peak mem 11603MB, user 5891.7s, sys 31.4s, output queue size 464
progress 35% @chr6:81000001, elapsed 235.3s, est remaining 437.0s, peak mem 12108MB, user 6894.1s, sys 34.7s, output queue size 106
progress 40% @chr7:64000001, elapsed 269.2s, est remaining 403.8s, peak mem 12420MB, user 7793.0s, sys 38.0s, output queue size 197
progress 45% @chr8:54000001, elapsed 306.0s, est remaining 374.0s, peak mem 12510MB, user 9023.0s, sys 42.4s, output queue size 204
progress 50% @chr7:13000001, elapsed 337.2s, est remaining 337.2s, peak mem 12688MB, user 9939.4s, sys 45.8s, output queue size 366
progress 55% @chr10:115000001, elapsed 374.1s, est remaining 306.1s, peak mem 12884MB, user 10991.4s, sys 49.4s, output queue size 348
progress 60% @chr11:130000001, elapsed 412.6s, est remaining 275.1s, peak mem 12884MB, user 12141.2s, sys 53.5s, output queue size 510
progress 65% @chr13:18000001, elapsed 447.1s, est remaining 240.7s, peak mem 12957MB, user 13323.5s, sys 57.3s, output queue size 138
progress 70% @chr14:35000001, elapsed 469.1s, est remaining 201.0s, peak mem 12957MB, user 13995.2s, sys 59.6s, output queue size 299
progress 75% @chr16:42000001, elapsed 507.9s, est remaining 169.3s, peak mem 12988MB, user 15036.6s, sys 62.7s, output queue size 461
progress 80% @chr18:11000001, elapsed 566.4s, est remaining 141.6s, peak mem 13189MB, user 16588.0s, sys 67.7s, output queue size 623
progress 85% @chr19:49000001, elapsed 616.3s, est remaining 108.8s, peak mem 13189MB, user 18341.1s, sys 73.1s, output queue size 351
progress 90% @chrX:30000001, elapsed 648.2s, est remaining 72.0s, peak mem 13347MB, user 19321.6s, sys 76.2s, output queue size 513
progress 95% @chrY:55000001, elapsed 667.6s, est remaining 35.1s, peak mem 13398MB, user 20021.1s, sys 78.6s, output queue size 240
progress 100% @chr22:23000001, elapsed 710.9s, est remaining 0.0s, peak mem 13581MB, user 20651.2s, sys 81.0s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 89084754634
output file size: 130112645179
reads: 1834997666
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.017 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.002 sys 0.027 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 2089.234 user 27.104 sys 2167.170 real
done: 1 calls 0.554 user 0.468 sys 1.028 real
exec_no_coor: 1 calls 0.142 user 0.067 sys 0.276 real
execute: 1 calls 0.003 user 0.000 sys 712.376 real
fetch: 3219323 calls 139.601 user 0.495 sys 199.591 real
fetch_reads: 3219322 calls 443.958 user 0.987 sys 449.522 real
fetch_ref: 2129996 calls 7.153 user 1.370 sys 8.619 real
fetch_vcf: 2129996 calls 93.885 user 1.770 sys 99.700 real
idle: 42363 calls 9.986 user 0.202 sys 1054.492 real
init: 1 calls 0.012 user 0.002 sys 0.034 real
update: 2567439 calls 4253.737 user 2.850 sys 4432.081 real
write: 3219323 calls 15423.675 user 41.186 sys 15615.164 real
overall: 14241357824 mem 20674.391 user 130.554 sys 715.096 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.028 user 0.012 sys 0.041 real
done: 1 calls 0.048 user 0.032 sys 0.078 real
idle: 61 calls 0.002 user 0.000 sys 31.328 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86732800 mem 0.063 user 0.063 sys 1.057 real