Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/3efce97e1a0ebde29505b8cec98814/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/3fa7431e6c620d4369640253248aa8/1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/3fa7431e6c620d4369640253248aa8/1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/3efce97e1a0ebde29505b8cec98814/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_6TL-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 3.2s, est remaining 60.9s, peak mem 2380MB, user 78.0s, sys 2.7s, output queue size 44
progress 10% @chr2:17000001, elapsed 6.2s, est remaining 55.8s, peak mem 3122MB, user 170.8s, sys 4.5s, output queue size 96
progress 15% @chr2:201000001, elapsed 9.0s, est remaining 51.1s, peak mem 4018MB, user 254.2s, sys 6.4s, output queue size 122
progress 20% @chr3:161000001, elapsed 11.3s, est remaining 45.4s, peak mem 4052MB, user 328.5s, sys 7.5s, output queue size 174
progress 25% @chr4:124000001, elapsed 13.7s, est remaining 41.0s, peak mem 4207MB, user 397.8s, sys 8.4s, output queue size 302
progress 30% @chr5:106000001, elapsed 15.7s, est remaining 36.5s, peak mem 4375MB, user 454.0s, sys 8.9s, output queue size 464
progress 35% @chr6:63000001, elapsed 18.4s, est remaining 34.2s, peak mem 4448MB, user 533.0s, sys 9.6s, output queue size 625
progress 40% @chr7:66000001, elapsed 21.4s, est remaining 32.1s, peak mem 4855MB, user 615.1s, sys 10.4s, output queue size 786
progress 45% @chr8:79000001, elapsed 25.3s, est remaining 30.9s, peak mem 5698MB, user 733.1s, sys 11.3s, output queue size 204
progress 50% @chr9:42000001, elapsed 30.6s, est remaining 30.6s, peak mem 7134MB, user 871.4s, sys 13.2s, output queue size 366
progress 55% @chr10:94000001, elapsed 34.0s, est remaining 27.8s, peak mem 7316MB, user 994.7s, sys 14.4s, output queue size 348
progress 60% @chr12:5000001, elapsed 36.5s, est remaining 24.3s, peak mem 7318MB, user 1085.6s, sys 15.4s, output queue size 510
progress 65% @chr13:30000001, elapsed 39.8s, est remaining 21.4s, peak mem 7318MB, user 1187.5s, sys 16.2s, output queue size 474
progress 70% @chr14:79000001, elapsed 41.7s, est remaining 17.9s, peak mem 7318MB, user 1243.6s, sys 16.6s, output queue size 635
progress 75% @chr16:41000001, elapsed 45.1s, est remaining 15.0s, peak mem 7318MB, user 1328.7s, sys 17.3s, output queue size 797
progress 80% @chr18:1, elapsed 49.7s, est remaining 12.4s, peak mem 7318MB, user 1459.2s, sys 18.3s, output queue size 623
progress 85% @chr20:18000001, elapsed 53.1s, est remaining 9.4s, peak mem 7318MB, user 1573.4s, sys 19.1s, output queue size 785
progress 90% @chrX:32000001, elapsed 55.9s, est remaining 6.2s, peak mem 7331MB, user 1656.0s, sys 19.8s, output queue size 947
progress 95% @chrY:52000001, elapsed 58.0s, est remaining 3.1s, peak mem 7331MB, user 1737.1s, sys 20.5s, output queue size 675
progress 100% @chrX:67000001, elapsed 64.3s, est remaining 0.0s, peak mem 7372MB, user 1809.8s, sys 21.0s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 44707427019
reads: 902411031
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 720.587 user 16.676 sys 735.272 real
done: 1 calls 0.265 user 0.029 sys 0.303 real
exec_no_coor: 1 calls 0.000 user 0.012 sys 0.021 real
execute: 1 calls 0.003 user 0.001 sys 64.272 real
idle: 223 calls 0.120 user 0.001 sys 190.561 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7731064832 mem 1811.637 user 21.497 sys 65.871 real