File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/a0aaae7705c830fb73c2c7d6f63709/.command.err
Size
4.0 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_3LU-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 5.4s, est remaining 101.9s, peak mem 4171MB, user 118.7s, sys 3.3s, output queue size 146
progress 10% @chr2:70000001, elapsed 10.5s, est remaining 94.5s, peak mem 5622MB, user 277.4s, sys 6.3s, output queue size 117
progress 15% @chr3:4000001, elapsed 15.4s, est remaining 87.3s, peak mem 8901MB, user 426.6s, sys 8.5s, output queue size 203
progress 20% @chr3:158000001, elapsed 19.4s, est remaining 77.7s, peak mem 10337MB, user 547.5s, sys 9.5s, output queue size 364
progress 25% @chr4:134000001, elapsed 23.3s, est remaining 69.9s, peak mem 10529MB, user 677.8s, sys 13.1s, output queue size 302
progress 30% @chr5:102000001, elapsed 26.0s, est remaining 60.8s, peak mem 10737MB, user 749.0s, sys 13.7s, output queue size 464
progress 35% @chr6:79000001, elapsed 29.9s, est remaining 55.6s, peak mem 10737MB, user 862.3s, sys 14.6s, output queue size 625
progress 40% @chr7:66000001, elapsed 35.0s, est remaining 52.5s, peak mem 10737MB, user 999.0s, sys 15.6s, output queue size 786
progress 45% @chr8:74000001, elapsed 40.1s, est remaining 49.0s, peak mem 11027MB, user 1168.8s, sys 16.9s, output queue size 204
progress 50% @chr9:102000001, elapsed 44.6s, est remaining 44.6s, peak mem 11266MB, user 1287.3s, sys 17.9s, output queue size 366
progress 55% @chr10:112000001, elapsed 49.8s, est remaining 40.7s, peak mem 11568MB, user 1431.5s, sys 18.8s, output queue size 527
progress 60% @chr11:134000001, elapsed 55.2s, est remaining 36.8s, peak mem 11574MB, user 1616.6s, sys 20.1s, output queue size 510
progress 65% @chr13:35000001, elapsed 60.6s, est remaining 32.6s, peak mem 11875MB, user 1753.7s, sys 20.8s, output queue size 672
progress 70% @chr14:86000001, elapsed 63.8s, est remaining 27.3s, peak mem 11888MB, user 1839.1s, sys 21.4s, output queue size 833
progress 75% @chr16:42000001, elapsed 70.5s, est remaining 23.5s, peak mem 12247MB, user 2054.6s, sys 22.7s, output queue size 989
progress 80% @chr18:29000001, elapsed 80.0s, est remaining 20.0s, peak mem 12480MB, user 2305.3s, sys 24.5s, output queue size 1151
progress 85% @chr20:3000001, elapsed 88.2s, est remaining 15.6s, peak mem 12485MB, user 2575.9s, sys 25.8s, output queue size 1313
progress 90% @chrX:43000001, elapsed 93.3s, est remaining 10.4s, peak mem 12719MB, user 2748.1s, sys 26.9s, output queue size 1475
progress 95% @chrY:55000001, elapsed 96.2s, est remaining 5.1s, peak mem 13053MB, user 2808.5s, sys 27.4s, output queue size 1637
progress 100% @chr22:23000001, elapsed 111.2s, est remaining 0.0s, peak mem 13181MB, user 3038.0s, sys 29.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 77410294291
reads: 1436635500
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1199.440 user 25.837 sys 1225.919 real
done: 1 calls 0.337 user 0.007 sys 0.353 real
exec_no_coor: 1 calls 0.000 user 0.011 sys 0.021 real
execute: 1 calls 0.004 user 0.003 sys 111.280 real
idle: 459 calls 0.167 user 0.001 sys 421.386 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 13821480960 mem 3039.967 user 29.738 sys 113.462 real