File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/3a3158a8e83ed7bbd35a83fc21d641/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_253-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_253-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 4.9s, est remaining 92.9s, peak mem 3967MB, user 109.2s, sys 5.5s, output queue size 146
progress 10% @chr2:90000001, elapsed 8.7s, est remaining 78.4s, peak mem 5121MB, user 233.7s, sys 8.7s, output queue size 117
progress 15% @chr3:8000001, elapsed 12.4s, est remaining 70.5s, peak mem 7600MB, user 348.6s, sys 10.4s, output queue size 203
progress 20% @chr3:174000001, elapsed 15.7s, est remaining 62.6s, peak mem 7827MB, user 444.1s, sys 12.2s, output queue size 283
progress 25% @chr4:129000001, elapsed 18.4s, est remaining 55.3s, peak mem 7829MB, user 531.7s, sys 13.2s, output queue size 302
progress 30% @chr5:106000001, elapsed 20.6s, est remaining 48.2s, peak mem 8007MB, user 592.7s, sys 13.7s, output queue size 464
progress 35% @chr6:44000001, elapsed 23.9s, est remaining 44.4s, peak mem 8049MB, user 687.1s, sys 14.5s, output queue size 625
progress 40% @chr7:65000001, elapsed 27.2s, est remaining 40.9s, peak mem 8360MB, user 791.1s, sys 15.5s, output queue size 197
progress 45% @chr8:78000001, elapsed 30.9s, est remaining 37.8s, peak mem 8552MB, user 900.6s, sys 16.4s, output queue size 356
progress 50% @chr9:102000001, elapsed 34.3s, est remaining 34.3s, peak mem 8725MB, user 997.5s, sys 17.5s, output queue size 366
progress 55% @chr10:99000001, elapsed 38.0s, est remaining 31.1s, peak mem 8767MB, user 1106.4s, sys 18.6s, output queue size 485
progress 60% @chr11:130000001, elapsed 41.9s, est remaining 27.9s, peak mem 8767MB, user 1226.0s, sys 19.5s, output queue size 510
progress 65% @chr12:123000001, elapsed 45.8s, est remaining 24.6s, peak mem 8782MB, user 1349.3s, sys 20.6s, output queue size 474
progress 70% @chr14:37000001, elapsed 48.1s, est remaining 20.6s, peak mem 8818MB, user 1423.6s, sys 21.3s, output queue size 635
progress 75% @chr16:42000001, elapsed 52.3s, est remaining 17.4s, peak mem 8873MB, user 1550.7s, sys 22.3s, output queue size 461
progress 80% @chr18:29000001, elapsed 58.7s, est remaining 14.7s, peak mem 9079MB, user 1725.9s, sys 23.7s, output queue size 623
progress 85% @chr19:57000001, elapsed 64.2s, est remaining 11.3s, peak mem 9079MB, user 1899.6s, sys 24.8s, output queue size 785
progress 90% @chrX:30000001, elapsed 67.7s, est remaining 7.5s, peak mem 9079MB, user 2023.3s, sys 25.7s, output queue size 513
progress 95% @chrY:54000001, elapsed 69.8s, est remaining 3.7s, peak mem 9206MB, user 2075.3s, sys 26.3s, output queue size 675
progress 100% @chr22:23000001, elapsed 77.2s, est remaining 0.0s, peak mem 9206MB, user 2186.1s, sys 27.2s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 71204379079
reads: 1300983781
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1093.739 user 23.356 sys 1118.783 real
done: 1 calls 0.025 user 0.056 sys 0.089 real
exec_no_coor: 1 calls 0.000 user 0.010 sys 0.016 real
execute: 1 calls 0.001 user 0.000 sys 77.239 real
idle: 243 calls 0.161 user 0.001 sys 212.087 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9653727232 mem 2187.058 user 27.405 sys 78.589 real