cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119963476, elapsed 13.3s, est remaining 252.8s, peak mem 7051MB, user 359.8s, sys 7.2s, output queue size 199
progress 10% @chr2:23695951, elapsed 25.7s, est remaining 231.1s, peak mem 8956MB, user 700.9s, sys 10.9s, output queue size 1158
progress 15% @chr2:189746380, elapsed 39.1s, est remaining 221.5s, peak mem 10680MB, user 1072.3s, sys 14.9s, output queue size 244
progress 20% @chr3:98822669, elapsed 53.3s, est remaining 213.2s, peak mem 10955MB, user 1468.3s, sys 18.0s, output queue size 437
progress 25% @chr4:88521574, elapsed 64.4s, est remaining 193.3s, peak mem 11817MB, user 1772.6s, sys 20.6s, output queue size 86
progress 30% @chr5:147640704, elapsed 73.9s, est remaining 172.5s, peak mem 11817MB, user 2026.7s, sys 22.4s, output queue size 208
progress 35% @chr6:131949264, elapsed 89.2s, est remaining 165.7s, peak mem 13055MB, user 2452.1s, sys 26.5s, output queue size 642
progress 40% @chr7:129451613, elapsed 103.3s, est remaining 155.0s, peak mem 13379MB, user 2832.0s, sys 29.4s, output queue size 4307
progress 45% @chr9:2015220, elapsed 119.8s, est remaining 146.4s, peak mem 15897MB, user 3305.9s, sys 34.3s, output queue size 21
progress 50% @chr10:33330708, elapsed 133.7s, est remaining 133.7s, peak mem 15897MB, user 3690.4s, sys 36.8s, output queue size 107
progress 55% @chr11:48150096, elapsed 145.7s, est remaining 119.2s, peak mem 15897MB, user 4019.5s, sys 39.0s, output queue size 12
progress 60% @chr12:26663685, elapsed 160.4s, est remaining 106.9s, peak mem 15897MB, user 4414.2s, sys 41.4s, output queue size 873
progress 65% @chr13:40555668, elapsed 173.5s, est remaining 93.4s, peak mem 15897MB, user 4795.6s, sys 44.2s, output queue size 568
progress 70% @chr15:43138574, elapsed 186.0s, est remaining 79.7s, peak mem 15897MB, user 5137.3s, sys 46.5s, output queue size 466
progress 75% @chr16:30961267, elapsed 201.6s, est remaining 67.2s, peak mem 15897MB, user 5581.3s, sys 49.8s, output queue size 32
progress 80% @chr17:42310507, elapsed 218.4s, est remaining 54.6s, peak mem 15897MB, user 6056.8s, sys 52.8s, output queue size 707
progress 85% @chr19:5693298, elapsed 231.7s, est remaining 40.9s, peak mem 15897MB, user 6429.5s, sys 55.2s, output queue size 404
progress 90% @chr19:55517224, elapsed 245.8s, est remaining 27.3s, peak mem 15897MB, user 6827.3s, sys 58.0s, output queue size 62
progress 95% @chr22:36322429, elapsed 260.8s, est remaining 13.7s, peak mem 15897MB, user 7250.4s, sys 61.4s, output queue size 22
progress 100% @chrY:25622443, elapsed 269.6s, est remaining 0.0s, peak mem 15897MB, user 7485.4s, sys 63.0s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 108867292734
reads: 2060211395
contig: 201779 intervals 37922265 bases
advance: 208647 calls 4095.680 user 55.698 sys 4267.407 real
done: 1 calls 0.415 user 0.327 sys 0.751 real
execute: 1 calls 0.005 user 0.011 sys 269.629 real
fetch_reads: 208647 calls 442.573 user 0.643 sys 449.436 real
fetch_ref: 207402 calls 0.803 user 0.844 sys 1.854 real
fetch_vcf: 207402 calls 81.357 user 2.326 sys 85.393 real
idle: 98 calls 0.168 user 0.000 sys 61.572 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 590125 calls 3280.484 user 2.206 sys 3354.125 real
overall: 16670109696 mem 8158.570 user 64.478 sys 272.264 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory