File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/593f0637bb05df86ba9dffea68d022/.command.err
Size
4.0 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1047_JG-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1047_JG-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 13.6s, est remaining 258.2s, peak mem 7135MB, user 331.9s, sys 15.0s, output queue size 58
progress 10% @chr2:17000001, elapsed 24.5s, est remaining 220.4s, peak mem 9665MB, user 668.0s, sys 19.7s, output queue size 79
progress 15% @chr2:189000001, elapsed 37.1s, est remaining 210.1s, peak mem 13521MB, user 1029.1s, sys 27.8s, output queue size 122
progress 20% @chr3:176000001, elapsed 47.7s, est remaining 190.6s, peak mem 13621MB, user 1361.3s, sys 31.0s, output queue size 174
progress 25% @chr4:87000001, elapsed 57.5s, est remaining 172.4s, peak mem 13810MB, user 1668.3s, sys 33.9s, output queue size 302
progress 30% @chr4:142000001, elapsed 65.0s, est remaining 151.7s, peak mem 14136MB, user 1896.0s, sys 36.2s, output queue size 464
progress 35% @chr6:79000001, elapsed 75.9s, est remaining 140.9s, peak mem 14460MB, user 2182.7s, sys 39.3s, output queue size 625
progress 40% @chr7:79000001, elapsed 88.2s, est remaining 132.3s, peak mem 15142MB, user 2536.3s, sys 42.5s, output queue size 786
progress 45% @chr8:74000001, elapsed 101.6s, est remaining 124.2s, peak mem 15368MB, user 3003.2s, sys 46.7s, output queue size 204
progress 50% @chr9:62000001, elapsed 112.4s, est remaining 112.4s, peak mem 15681MB, user 3286.7s, sys 49.5s, output queue size 366
progress 55% @chr10:118000001, elapsed 125.5s, est remaining 102.7s, peak mem 15720MB, user 3650.3s, sys 53.1s, output queue size 527
progress 60% @chr11:130000001, elapsed 138.2s, est remaining 92.1s, peak mem 15720MB, user 4086.7s, sys 56.4s, output queue size 510
progress 65% @chr12:113000001, elapsed 152.1s, est remaining 81.9s, peak mem 15797MB, user 4456.8s, sys 59.1s, output queue size 672
progress 70% @chr14:84000001, elapsed 160.1s, est remaining 68.6s, peak mem 15797MB, user 4733.8s, sys 61.2s, output queue size 833
progress 75% @chr16:42000001, elapsed 174.4s, est remaining 58.1s, peak mem 15957MB, user 5106.1s, sys 64.3s, output queue size 995
progress 80% @chr16:89000001, elapsed 194.4s, est remaining 48.6s, peak mem 16101MB, user 5719.9s, sys 68.7s, output queue size 623
progress 85% @chr19:45000001, elapsed 212.1s, est remaining 37.4s, peak mem 16507MB, user 6295.9s, sys 73.2s, output queue size 785
progress 90% @chrX:42000001, elapsed 223.4s, est remaining 24.8s, peak mem 16892MB, user 6712.6s, sys 76.4s, output queue size 513
progress 95% @chrY:54000001, elapsed 231.6s, est remaining 12.2s, peak mem 16892MB, user 6988.3s, sys 78.8s, output queue size 240
progress 100% @chrX:67000001, elapsed 253.6s, est remaining 0.0s, peak mem 16892MB, user 7241.6s, sys 81.4s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 140423331250
reads: 3098808471
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 2519.297 user 75.201 sys 2519.839 real
done: 1 calls 0.360 user 0.065 sys 0.430 real
exec_no_coor: 1 calls 0.048 user 0.115 sys 0.201 real
execute: 1 calls 0.001 user 0.001 sys 253.666 real
idle: 616 calls 0.149 user 0.011 sys 578.087 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 17713098752 mem 7244.502 user 82.514 sys 257.189 real