cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:117000001, elapsed 22.9s, est remaining 435.9s, peak mem 4983MB, user 561.2s, sys 7.9s, output queue size 52
progress 10% @chr2:38000001, elapsed 39.9s, est remaining 358.7s, peak mem 5919MB, user 1119.9s, sys 11.2s, output queue size 48
progress 15% @chr2:224000001, elapsed 57.9s, est remaining 328.2s, peak mem 6327MB, user 1654.7s, sys 14.1s, output queue size 122
progress 20% @chr3:128000001, elapsed 75.2s, est remaining 300.7s, peak mem 6416MB, user 2171.5s, sys 16.0s, output queue size 141
progress 25% @chr4:87000001, elapsed 89.8s, est remaining 269.3s, peak mem 6632MB, user 2618.4s, sys 18.0s, output queue size 302
progress 30% @chr5:81000001, elapsed 101.4s, est remaining 236.5s, peak mem 6680MB, user 2950.4s, sys 19.4s, output queue size 464
progress 35% @chr6:81000001, elapsed 114.0s, est remaining 211.7s, peak mem 6680MB, user 3370.8s, sys 21.0s, output queue size 106
progress 40% @chr7:63000001, elapsed 131.6s, est remaining 197.4s, peak mem 6915MB, user 3825.6s, sys 23.0s, output queue size 231
progress 45% @chr8:72000001, elapsed 152.7s, est remaining 186.6s, peak mem 7474MB, user 4447.6s, sys 25.6s, output queue size 204
progress 50% @chr9:81000001, elapsed 167.2s, est remaining 167.2s, peak mem 7601MB, user 4855.9s, sys 27.5s, output queue size 366
progress 55% @chr10:62000001, elapsed 184.5s, est remaining 151.0s, peak mem 7744MB, user 5429.6s, sys 29.9s, output queue size 348
progress 60% @chr11:101000001, elapsed 201.0s, est remaining 134.0s, peak mem 7752MB, user 5948.4s, sys 32.1s, output queue size 504
progress 65% @chr13:31000001, elapsed 218.9s, est remaining 117.9s, peak mem 7828MB, user 6447.8s, sys 34.1s, output queue size 666
progress 70% @chr14:35000001, elapsed 231.5s, est remaining 99.2s, peak mem 8007MB, user 6828.0s, sys 35.9s, output queue size 827
progress 75% @chr16:42000001, elapsed 252.2s, est remaining 84.1s, peak mem 8027MB, user 7442.4s, sys 38.2s, output queue size 461
progress 80% @chr18:10000001, elapsed 279.6s, est remaining 69.9s, peak mem 8027MB, user 8175.8s, sys 41.2s, output queue size 623
progress 85% @chr20:25000001, elapsed 304.8s, est remaining 53.8s, peak mem 8027MB, user 9028.0s, sys 44.3s, output queue size 351
progress 90% @chrX:30000001, elapsed 325.3s, est remaining 36.1s, peak mem 8185MB, user 9635.6s, sys 46.5s, output queue size 513
progress 95% @chrY:52000001, elapsed 336.7s, est remaining 17.7s, peak mem 8187MB, user 9961.4s, sys 47.9s, output queue size 675
progress 100% @chr22:23000001, elapsed 352.7s, est remaining 0.0s, peak mem 8187MB, user 10375.6s, sys 49.7s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 41196981261
output file size: 63302558985
reads: 815252332
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.019 real
ReadQualCal::delayed_init: 1 calls 0.008 user 0.001 sys 0.028 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.006 real
advance: 3219322 calls 922.027 user 13.563 sys 964.998 real
done: 1 calls 0.478 user 0.349 sys 0.835 real
exec_no_coor: 1 calls 0.000 user 0.014 sys 0.022 real
execute: 1 calls 0.005 user 0.000 sys 353.399 real
fetch: 3219323 calls 42.485 user 0.426 sys 63.399 real
fetch_reads: 3219322 calls 165.848 user 0.783 sys 170.504 real
fetch_ref: 1878612 calls 6.354 user 1.204 sys 7.801 real
fetch_vcf: 1878612 calls 102.976 user 1.756 sys 108.396 real
idle: 24217 calls 9.347 user 0.126 sys 384.752 real
init: 1 calls 0.011 user 0.001 sys 0.034 real
update: 2116866 calls 2601.037 user 4.026 sys 2720.136 real
write: 3219323 calls 7354.989 user 23.725 sys 7466.079 real
overall: 8584912896 mem 10394.198 user 68.439 sys 355.717 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.039 user 0.001 sys 0.042 real
done: 1 calls 0.050 user 0.020 sys 0.078 real
idle: 61 calls 0.002 user 0.000 sys 31.368 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83619840 mem 0.081 user 0.046 sys 1.056 real