cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1029_N5D-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:184000001, elapsed 76.1s, est remaining 1445.6s, peak mem 8369MB, user 1841.9s, sys 14.0s, output queue size 44
progress 10% @chr2:38000001, elapsed 141.2s, est remaining 1271.1s, peak mem 12772MB, user 3892.3s, sys 24.8s, output queue size 74
progress 15% @chr3:8000001, elapsed 220.5s, est remaining 1249.7s, peak mem 14894MB, user 6157.7s, sys 34.6s, output queue size 203
progress 20% @chr3:128000001, elapsed 295.2s, est remaining 1180.9s, peak mem 15223MB, user 8506.0s, sys 47.9s, output queue size 141
progress 25% @chr4:135000001, elapsed 360.8s, est remaining 1082.3s, peak mem 15932MB, user 10420.5s, sys 56.0s, output queue size 302
progress 30% @chr5:105000001, elapsed 413.0s, est remaining 963.8s, peak mem 16345MB, user 11996.2s, sys 63.9s, output queue size 464
progress 35% @chr6:79000001, elapsed 484.6s, est remaining 900.1s, peak mem 16580MB, user 13977.1s, sys 73.1s, output queue size 625
progress 40% @chr7:63000001, elapsed 551.9s, est remaining 827.9s, peak mem 17495MB, user 16140.1s, sys 80.9s, output queue size 197
progress 45% @chr8:70000001, elapsed 622.5s, est remaining 760.8s, peak mem 19470MB, user 18133.8s, sys 87.8s, output queue size 356
progress 50% @chr7:13000001, elapsed 679.3s, est remaining 679.3s, peak mem 19470MB, user 19806.1s, sys 92.9s, output queue size 366
progress 55% @chr10:62000001, elapsed 749.7s, est remaining 613.4s, peak mem 19843MB, user 21850.1s, sys 99.6s, output queue size 400
progress 60% @chr12:5000001, elapsed 811.7s, est remaining 541.1s, peak mem 19843MB, user 23771.9s, sys 106.3s, output queue size 562
progress 65% @chr13:33000001, elapsed 859.1s, est remaining 462.6s, peak mem 19843MB, user 25515.1s, sys 113.5s, output queue size 474
progress 70% @chr14:79000001, elapsed 888.6s, est remaining 380.8s, peak mem 19843MB, user 26591.9s, sys 118.2s, output queue size 299
progress 75% @chr16:42000001, elapsed 943.0s, est remaining 314.3s, peak mem 19843MB, user 27991.2s, sys 124.4s, output queue size 461
progress 80% @chr18:11000001, elapsed 1021.1s, est remaining 255.3s, peak mem 19996MB, user 30128.8s, sys 133.1s, output queue size 623
progress 85% @chr20:3000001, elapsed 1088.6s, est remaining 192.1s, peak mem 19996MB, user 32541.4s, sys 142.9s, output queue size 351
progress 90% @chrX:30000001, elapsed 1132.8s, est remaining 125.9s, peak mem 20033MB, user 33868.6s, sys 148.2s, output queue size 513
progress 95% @chrY:55000001, elapsed 1158.7s, est remaining 61.0s, peak mem 20272MB, user 34595.4s, sys 151.5s, output queue size 675
progress 100% @chr22:23000001, elapsed 1212.4s, est remaining 0.0s, peak mem 20272MB, user 35636.0s, sys 156.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 108867292734
output file size: 163845857857
reads: 2060211395
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.010 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.024 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 3316.185 user 53.318 sys 3424.174 real
done: 1 calls 0.538 user 0.329 sys 0.868 real
exec_no_coor: 1 calls 0.150 user 0.047 sys 0.206 real
execute: 1 calls 0.005 user 0.000 sys 1216.228 real
fetch: 3219323 calls 233.083 user 0.716 sys 306.239 real
fetch_reads: 3219322 calls 724.852 user 2.532 sys 731.591 real
fetch_ref: 2231743 calls 13.083 user 2.091 sys 12.386 real
fetch_vcf: 2231743 calls 126.787 user 2.621 sys 131.266 real
idle: 69912 calls 19.282 user 0.348 sys 1339.204 real
init: 1 calls 0.006 user 0.000 sys 0.032 real
update: 2740046 calls 7960.927 user 4.630 sys 8140.431 real
write: 3219323 calls 27089.301 user 84.470 sys 27316.109 real
overall: 21257621504 mem 35674.755 user 236.942 sys 1219.448 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.table --after 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.table.post 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.020 sys 0.042 real
done: 1 calls 0.059 user 0.020 sys 0.081 real
idle: 61 calls 0.002 user 0.000 sys 31.344 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86802432 mem 0.082 user 0.051 sys 1.060 real