Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Read1 before filtering:
total reads: 97157901
total bases: 14670843051
Q20 bases: 14251088970(97.1389%)
Q30 bases: 13474872832(91.848%)
Q40 bases: 13474872832(91.848%)
Read2 before filtering:
total reads: 97157901
total bases: 14670843051
Q20 bases: 13983593614(95.3155%)
Q30 bases: 12826262508(87.4269%)
Q40 bases: 12826262508(87.4269%)
Read1 after filtering:
total reads: 95403228
total bases: 13857159978
Q20 bases: 13536164738(97.6835%)
Q30 bases: 12850908504(92.7384%)
Q40 bases: 12850908504(92.7384%)
Read2 after filtering:
total reads: 95403228
total bases: 13858374204
Q20 bases: 13332462287(96.2051%)
Q30 bases: 12316681581(88.8754%)
Q40 bases: 12316681581(88.8754%)
Filtering result:
reads passed filter: 190806456
reads failed due to low quality: 3494912
reads failed due to too many N: 9684
reads failed due to too short: 4750
reads with adapter trimmed: 29879839
bases trimmed due to adapters: 1100372399
Duplication rate: 11.7578%
Insert size peak (evaluated by paired-end reads): 194
JSON report: 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.html
fastp --in1 1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L004_R1_001.fastq.gz --in2 1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L004_R2_001.fastq.gz --out1 1029_T05-T1-TDNA-1_A23MHWWLT4_1/1029_T05-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_T05-T1-TDNA-1_A23MHWWLT4_1/1029_T05-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4
fastp v1.0.1, time used: 742 seconds