File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/296e0d5aac11aef463d0a297537fcb/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_bR4-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_bR4-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 5.0s, est remaining 95.4s, peak mem 4775MB, user 111.9s, sys 4.1s, output queue size 146
progress 10% @chr2:84000001, elapsed 9.7s, est remaining 87.0s, peak mem 6630MB, user 252.0s, sys 8.6s, output queue size 96
progress 15% @chr2:201000001, elapsed 14.2s, est remaining 80.2s, peak mem 9842MB, user 382.8s, sys 11.6s, output queue size 203
progress 20% @chr3:155000001, elapsed 17.9s, est remaining 71.6s, peak mem 10487MB, user 501.0s, sys 14.5s, output queue size 218
progress 25% @chr4:133000001, elapsed 21.0s, est remaining 63.0s, peak mem 10487MB, user 604.6s, sys 15.5s, output queue size 302
progress 30% @chr5:106000001, elapsed 23.9s, est remaining 55.7s, peak mem 10487MB, user 692.6s, sys 16.3s, output queue size 464
progress 35% @chr6:91000001, elapsed 27.5s, est remaining 51.1s, peak mem 10492MB, user 793.6s, sys 17.5s, output queue size 625
progress 40% @chr7:66000001, elapsed 31.6s, est remaining 47.4s, peak mem 10731MB, user 905.5s, sys 18.5s, output queue size 786
progress 45% @chr8:79000001, elapsed 36.9s, est remaining 45.1s, peak mem 11035MB, user 1042.8s, sys 19.6s, output queue size 948
progress 50% @chr8:127000001, elapsed 41.3s, est remaining 41.3s, peak mem 11521MB, user 1187.7s, sys 21.0s, output queue size 366
progress 55% @chr10:103000001, elapsed 46.0s, est remaining 37.7s, peak mem 11604MB, user 1333.3s, sys 22.0s, output queue size 527
progress 60% @chr12:1000001, elapsed 50.3s, est remaining 33.5s, peak mem 11604MB, user 1466.5s, sys 22.9s, output queue size 689
progress 65% @chr11:108000001, elapsed 55.6s, est remaining 29.9s, peak mem 11604MB, user 1622.6s, sys 23.8s, output queue size 672
progress 70% @chr14:71000001, elapsed 58.7s, est remaining 25.1s, peak mem 11604MB, user 1706.6s, sys 24.4s, output queue size 833
progress 75% @chr16:42000001, elapsed 63.5s, est remaining 21.2s, peak mem 11805MB, user 1859.9s, sys 25.4s, output queue size 995
progress 80% @chr18:13000001, elapsed 70.6s, est remaining 17.7s, peak mem 11851MB, user 2033.6s, sys 26.6s, output queue size 1157
progress 85% @chr20:25000001, elapsed 77.2s, est remaining 13.6s, peak mem 11869MB, user 2276.9s, sys 28.1s, output queue size 785
progress 90% @chrX:38000001, elapsed 81.1s, est remaining 9.0s, peak mem 12302MB, user 2427.7s, sys 29.1s, output queue size 513
progress 95% @chrY:55000001, elapsed 83.7s, est remaining 4.4s, peak mem 12314MB, user 2504.7s, sys 29.7s, output queue size 675
progress 100% @chr22:23000001, elapsed 90.8s, est remaining 0.0s, peak mem 12530MB, user 2619.3s, sys 30.4s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 83203675103
reads: 1632923217
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1290.376 user 26.949 sys 1318.788 real
done: 1 calls 0.020 user 0.049 sys 0.077 real
exec_no_coor: 1 calls 0.007 user 0.000 sys 0.007 real
execute: 1 calls 0.001 user 0.002 sys 90.809 real
idle: 205 calls 0.136 user 0.001 sys 195.660 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 13139603456 mem 2620.268 user 30.665 sys 92.154 real