cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 20.7s, est remaining 393.5s, peak mem 4657MB, user 513.0s, sys 5.5s, output queue size 52
progress 10% @chr2:68000001, elapsed 35.9s, est remaining 323.3s, peak mem 5555MB, user 1014.8s, sys 8.2s, output queue size 48
progress 15% @chr2:211000001, elapsed 52.2s, est remaining 295.8s, peak mem 5891MB, user 1498.4s, sys 10.8s, output queue size 122
progress 20% @chr3:161000001, elapsed 68.0s, est remaining 271.8s, peak mem 5931MB, user 1965.3s, sys 12.7s, output queue size 141
progress 25% @chr4:136000001, elapsed 81.7s, est remaining 245.0s, peak mem 6037MB, user 2381.7s, sys 14.7s, output queue size 302
progress 30% @chr5:107000001, elapsed 92.7s, est remaining 216.4s, peak mem 6054MB, user 2737.8s, sys 16.2s, output queue size 464
progress 35% @chr6:79000001, elapsed 108.5s, est remaining 201.5s, peak mem 6295MB, user 3176.6s, sys 17.9s, output queue size 106
progress 40% @chr7:67000001, elapsed 124.2s, est remaining 186.3s, peak mem 6395MB, user 3654.1s, sys 20.2s, output queue size 195
progress 45% @chr8:58000001, elapsed 142.0s, est remaining 173.6s, peak mem 6508MB, user 4174.0s, sys 22.5s, output queue size 204
progress 50% @chr9:76000001, elapsed 155.8s, est remaining 155.8s, peak mem 6612MB, user 4617.2s, sys 24.3s, output queue size 187
progress 55% @chr10:118000001, elapsed 173.8s, est remaining 142.2s, peak mem 6769MB, user 5137.4s, sys 26.5s, output queue size 348
progress 60% @chr12:3000001, elapsed 192.8s, est remaining 128.6s, peak mem 6769MB, user 5713.5s, sys 28.7s, output queue size 312
progress 65% @chr13:31000001, elapsed 208.6s, est remaining 112.3s, peak mem 6771MB, user 6225.8s, sys 30.6s, output queue size 138
progress 70% @chr14:82000001, elapsed 219.9s, est remaining 94.2s, peak mem 6803MB, user 6563.8s, sys 31.9s, output queue size 299
progress 75% @chr16:42000001, elapsed 238.7s, est remaining 79.6s, peak mem 6845MB, user 7069.7s, sys 34.0s, output queue size 461
progress 80% @chr18:9000001, elapsed 265.7s, est remaining 66.4s, peak mem 6916MB, user 7878.0s, sys 37.0s, output queue size 189
progress 85% @chr20:18000001, elapsed 289.1s, est remaining 51.0s, peak mem 6916MB, user 8625.3s, sys 39.7s, output queue size 351
progress 90% @chrX:31000001, elapsed 304.9s, est remaining 33.9s, peak mem 6916MB, user 9164.6s, sys 41.9s, output queue size 78
progress 95% @chrY:54000001, elapsed 314.6s, est remaining 16.6s, peak mem 6916MB, user 9444.0s, sys 43.2s, output queue size 240
progress 100% @chr22:23000001, elapsed 332.5s, est remaining 0.0s, peak mem 6916MB, user 9715.9s, sys 44.4s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 40063100595
output file size: 61500287090
reads: 753549713
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.021 real
ReadQualCal::delayed_init: 1 calls 0.003 user 0.001 sys 0.026 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 875.304 user 11.646 sys 918.038 real
done: 1 calls 0.533 user 0.308 sys 0.847 real
exec_no_coor: 1 calls 0.003 user 0.008 sys 0.018 real
execute: 1 calls 0.006 user 0.000 sys 333.184 real
fetch: 3219323 calls 35.654 user 0.309 sys 54.024 real
fetch_reads: 3219322 calls 132.606 user 0.685 sys 136.809 real
fetch_ref: 1863527 calls 6.332 user 1.059 sys 7.778 real
fetch_vcf: 1863527 calls 102.262 user 1.492 sys 107.651 real
idle: 14423 calls 4.630 user 0.101 sys 451.899 real
init: 1 calls 0.005 user 0.001 sys 0.032 real
update: 2024835 calls 2161.213 user 3.005 sys 2245.470 real
write: 3219323 calls 6886.631 user 22.066 sys 6970.355 real
overall: 7252025344 mem 9728.354 user 62.341 sys 335.219 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.020 user 0.010 sys 0.043 real
done: 1 calls 0.069 user 0.011 sys 0.080 real
idle: 61 calls 0.002 user 0.000 sys 31.371 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86810624 mem 0.096 user 0.032 sys 1.055 real