File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/28f1e0184de7ef6b7cceb2b49efc4d/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:26000001, elapsed 3.6s, est remaining 69.2s, peak mem 3258MB, user 77.5s, sys 2.7s, output queue size 150
progress 10% @chr2:94000001, elapsed 6.8s, est remaining 61.5s, peak mem 4354MB, user 179.4s, sys 5.1s, output queue size 117
progress 15% @chr3:17000001, elapsed 11.0s, est remaining 62.1s, peak mem 7522MB, user 293.7s, sys 7.1s, output queue size 203
progress 20% @chr3:160000001, elapsed 14.2s, est remaining 56.9s, peak mem 8084MB, user 397.9s, sys 10.1s, output queue size 283
progress 25% @chr4:129000001, elapsed 16.7s, est remaining 50.0s, peak mem 8090MB, user 483.1s, sys 11.2s, output queue size 302
progress 30% @chr5:101000001, elapsed 18.5s, est remaining 43.2s, peak mem 8090MB, user 537.0s, sys 11.8s, output queue size 464
progress 35% @chr6:91000001, elapsed 21.6s, est remaining 40.2s, peak mem 8437MB, user 617.8s, sys 12.4s, output queue size 625
progress 40% @chr7:48000001, elapsed 25.1s, est remaining 37.7s, peak mem 8654MB, user 712.9s, sys 13.2s, output queue size 786
progress 45% @chr8:78000001, elapsed 29.1s, est remaining 35.6s, peak mem 8826MB, user 849.8s, sys 14.3s, output queue size 204
progress 50% @chr9:88000001, elapsed 32.6s, est remaining 32.6s, peak mem 8826MB, user 943.3s, sys 15.1s, output queue size 366
progress 55% @chr10:118000001, elapsed 36.3s, est remaining 29.7s, peak mem 8826MB, user 1051.3s, sys 16.1s, output queue size 485
progress 60% @chr12:3000001, elapsed 39.7s, est remaining 26.4s, peak mem 8826MB, user 1158.1s, sys 17.0s, output queue size 510
progress 65% @chr12:56000001, elapsed 44.1s, est remaining 23.8s, peak mem 8826MB, user 1281.3s, sys 18.1s, output queue size 672
progress 70% @chr14:76000001, elapsed 46.5s, est remaining 19.9s, peak mem 8826MB, user 1352.1s, sys 18.5s, output queue size 833
progress 75% @chr16:42000001, elapsed 50.5s, est remaining 16.8s, peak mem 8826MB, user 1454.5s, sys 19.1s, output queue size 995
progress 80% @chr18:28000001, elapsed 56.8s, est remaining 14.2s, peak mem 8927MB, user 1659.6s, sys 20.7s, output queue size 623
progress 85% @chr19:35000001, elapsed 62.5s, est remaining 11.0s, peak mem 8975MB, user 1849.3s, sys 21.8s, output queue size 785
progress 90% @chr22:39000001, elapsed 66.5s, est remaining 7.4s, peak mem 9268MB, user 1952.7s, sys 22.4s, output queue size 947
progress 95% @chrY:55000001, elapsed 69.3s, est remaining 3.6s, peak mem 9453MB, user 2038.2s, sys 23.1s, output queue size 1109
progress 100% @chr22:23000001, elapsed 80.4s, est remaining 0.0s, peak mem 9453MB, user 2184.7s, sys 23.9s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 67770633046
reads: 1275212856
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1080.306 user 21.129 sys 1100.639 real
done: 1 calls 0.028 user 0.050 sys 0.085 real
exec_no_coor: 1 calls 0.000 user 0.007 sys 0.010 real
execute: 1 calls 0.002 user 0.001 sys 80.460 real
idle: 325 calls 0.164 user 0.001 sys 316.627 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9912844288 mem 2185.703 user 24.328 sys 81.906 real