File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/a105dc1380e1e47df6911e9265f7d6/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (659_cVw-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/cf1a25dda7a77e273b714c4daa1f0f/659_cVw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d7b9228001ef07ed593d306dff6db4/659_cVw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/258b77a6e25c221df6ccf1e6d28c7b/659_cVw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/86c9203cab60e97029d393989cdd9f/659_cVw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/a105dc1380e1e47df6911e9265f7d6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/7fa661d84b072f3dc73d39b0020bf8/659_cVw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/3b688f1ed8bb1bf43eec58a94980ed/659_cVw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/d38fc14d3f5a97aa2ad50979c70284/659_cVw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/a105dc1380e1e47df6911e9265f7d6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/a7b05caaab156822500189bd42c988/659_cVw-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory