Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/65c3a895f3cf1f1d8a74bf73c8312b/659_cVw-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/defdc54a0da32917ca6b30d1b15796/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/65c3a895f3cf1f1d8a74bf73c8312b/659_cVw-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/defdc54a0da32917ca6b30d1b15796/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_cVw-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_cVw-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:178000001, elapsed 5.0s, est remaining 94.2s, peak mem 4285MB, user 116.9s, sys 3.3s, output queue size 146
progress 10% @chr2:70000001, elapsed 9.1s, est remaining 81.9s, peak mem 5914MB, user 245.6s, sys 6.9s, output queue size 79
progress 15% @chr2:181000001, elapsed 14.1s, est remaining 80.1s, peak mem 9584MB, user 384.9s, sys 9.1s, output queue size 203
progress 20% @chr3:158000001, elapsed 17.9s, est remaining 71.7s, peak mem 9731MB, user 510.0s, sys 12.2s, output queue size 174
progress 25% @chr4:109000001, elapsed 21.3s, est remaining 64.0s, peak mem 9968MB, user 613.0s, sys 13.3s, output queue size 302
progress 30% @chr5:106000001, elapsed 24.0s, est remaining 55.9s, peak mem 10126MB, user 689.6s, sys 14.1s, output queue size 464
progress 35% @chr6:44000001, elapsed 27.6s, est remaining 51.3s, peak mem 10169MB, user 795.2s, sys 15.0s, output queue size 625
progress 40% @chr7:66000001, elapsed 32.0s, est remaining 48.0s, peak mem 10803MB, user 914.3s, sys 16.0s, output queue size 786
progress 45% @chr8:78000001, elapsed 37.3s, est remaining 45.6s, peak mem 11000MB, user 1065.7s, sys 17.3s, output queue size 948
progress 50% @chr9:87000001, elapsed 41.8s, est remaining 41.8s, peak mem 11257MB, user 1198.5s, sys 18.4s, output queue size 366
progress 55% @chr10:103000001, elapsed 46.6s, est remaining 38.1s, peak mem 11298MB, user 1351.9s, sys 19.5s, output queue size 527
progress 60% @chr12:1000001, elapsed 51.1s, est remaining 34.1s, peak mem 11298MB, user 1495.8s, sys 20.3s, output queue size 689
progress 65% @chr13:24000001, elapsed 56.4s, est remaining 30.4s, peak mem 11298MB, user 1648.0s, sys 21.3s, output queue size 672
progress 70% @chr14:76000001, elapsed 59.4s, est remaining 25.4s, peak mem 11298MB, user 1737.0s, sys 21.7s, output queue size 833
progress 75% @chr16:36000001, elapsed 64.8s, est remaining 21.6s, peak mem 11298MB, user 1900.5s, sys 22.9s, output queue size 995
progress 80% @chr17:82000001, elapsed 72.0s, est remaining 18.0s, peak mem 11298MB, user 2114.1s, sys 24.7s, output queue size 623
progress 85% @chr19:15000001, elapsed 78.8s, est remaining 13.9s, peak mem 11298MB, user 2330.2s, sys 26.4s, output queue size 785
progress 90% @chrX:43000001, elapsed 82.7s, est remaining 9.2s, peak mem 11739MB, user 2477.9s, sys 27.4s, output queue size 513
progress 95% @chrY:55000001, elapsed 85.1s, est remaining 4.5s, peak mem 11749MB, user 2550.2s, sys 28.1s, output queue size 675
progress 100% @chr15:88000001, elapsed 93.0s, est remaining 0.0s, peak mem 11823MB, user 2667.1s, sys 29.1s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 79716908892
reads: 1583694629
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1245.086 user 25.407 sys 1269.337 real
done: 1 calls 0.016 user 0.008 sys 0.031 real
exec_no_coor: 1 calls 0.008 user 0.008 sys 0.020 real
execute: 1 calls 0.005 user 0.003 sys 93.009 real
idle: 242 calls 0.172 user 0.001 sys 216.124 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 12399693824 mem 2668.148 user 29.336 sys 94.341 real