cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_6TL-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:120063089, elapsed 5.3s, est remaining 100.2s, peak mem 4325MB, user 137.4s, sys 3.7s, output queue size 177
progress 10% @chr2:23703186, elapsed 11.5s, est remaining 103.6s, peak mem 5100MB, user 304.9s, sys 5.8s, output queue size 1162
progress 15% @chr2:189666133, elapsed 17.5s, est remaining 99.3s, peak mem 5513MB, user 466.2s, sys 7.6s, output queue size 284
progress 20% @chr3:63999450, elapsed 23.2s, est remaining 93.0s, peak mem 5801MB, user 618.8s, sys 9.0s, output queue size 687
progress 25% @chr4:88463532, elapsed 28.6s, est remaining 85.8s, peak mem 5801MB, user 760.4s, sys 10.0s, output queue size 87
progress 30% @chr5:147397666, elapsed 33.9s, est remaining 79.0s, peak mem 5866MB, user 898.2s, sys 11.0s, output queue size 195
progress 35% @chr6:132401163, elapsed 40.5s, est remaining 75.2s, peak mem 5866MB, user 1070.5s, sys 12.4s, output queue size 638
progress 40% @chr7:128848793, elapsed 47.5s, est remaining 71.3s, peak mem 6290MB, user 1255.8s, sys 13.8s, output queue size 551
progress 45% @chr8:127734017, elapsed 59.8s, est remaining 73.1s, peak mem 8765MB, user 1604.0s, sys 17.2s, output queue size 1458
progress 50% @chr10:33226134, elapsed 66.7s, est remaining 66.7s, peak mem 8816MB, user 1793.9s, sys 19.1s, output queue size 106
progress 55% @chr11:48167204, elapsed 71.1s, est remaining 58.2s, peak mem 8816MB, user 1909.9s, sys 19.9s, output queue size 10
progress 60% @chr12:11800919, elapsed 76.9s, est remaining 51.3s, peak mem 8816MB, user 2063.0s, sys 21.0s, output queue size 769
progress 65% @chr13:40555668, elapsed 82.7s, est remaining 44.5s, peak mem 8816MB, user 2219.3s, sys 22.3s, output queue size 554
progress 70% @chr15:43036528, elapsed 88.1s, est remaining 37.8s, peak mem 8816MB, user 2362.8s, sys 23.5s, output queue size 456
progress 75% @chr16:30963433, elapsed 94.3s, est remaining 31.4s, peak mem 8816MB, user 2530.8s, sys 24.7s, output queue size 38
progress 80% @chr17:42609086, elapsed 100.1s, est remaining 25.0s, peak mem 8816MB, user 2692.8s, sys 26.1s, output queue size 119
progress 85% @chr19:5915221, elapsed 106.4s, est remaining 18.8s, peak mem 8816MB, user 2862.7s, sys 27.2s, output queue size 2045
progress 90% @chr19:56008788, elapsed 109.2s, est remaining 12.1s, peak mem 8816MB, user 2937.6s, sys 28.1s, output queue size 804
progress 95% @chr22:36564351, elapsed 114.5s, est remaining 6.0s, peak mem 8816MB, user 3077.0s, sys 29.1s, output queue size 855
progress 100% @chrX:154928571, elapsed 119.9s, est remaining 0.0s, peak mem 8816MB, user 3221.3s, sys 30.0s, output queue size 637
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 44707427019
reads: 902411031
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1572.750 user 23.840 sys 1652.404 real
done: 1 calls 0.396 user 0.389 sys 0.788 real
execute: 1 calls 0.000 user 0.010 sys 119.880 real
fetch_reads: 208647 calls 161.572 user 0.319 sys 168.824 real
fetch_ref: 206895 calls 0.661 user 0.866 sys 1.682 real
fetch_vcf: 206895 calls 76.562 user 2.045 sys 82.309 real
idle: 97 calls 0.107 user 0.003 sys 32.230 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 387310 calls 1670.445 user 2.237 sys 1715.045 real
overall: 9245204480 mem 3617.557 user 31.141 sys 121.529 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory