Work Directory

Task
DAQ:BAM_POSTDEDUP_QC:SEQTOOL (1047_JG-T1-TDNA-1_A23MHWWLT4_1)
Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/358f81cf1801ad493b846c0381e8ca

Files (72)

Name Size Modified
.command.begin 6 bytes Jun 05, 2026 4:50 PM
.command.err 18.2 KB Jun 05, 2026 5:36 PM
.command.log 38.4 KB Jun 05, 2026 5:36 PM
.command.out 17.7 KB Jun 05, 2026 5:36 PM
.command.run 17.4 KB Jun 05, 2026 4:50 PM
.command.sh 1.6 KB Jun 05, 2026 4:50 PM
.command.trace 294 bytes Jun 05, 2026 5:36 PM
.command.yaml 3.5 KB Jun 05, 2026 4:50 PM
.exitcode 1 byte Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md.depth.gz 191.6 MB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md.depth.gz.tbi 584.8 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md.depth.png 35.4 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md.depth_hist.tsv 11.5 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md.noise_summary.tsv 221 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/contamination.tsv 172 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 440 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_coding_postQC_hg38.bed.tsv 453 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 453 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_postQC_hg38.bed.tsv 453 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.foresight_clarity_targets_hg38.bed.tsv 449 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 453 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 452 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 453 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/fragsize.fragsize.png 27.7 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/fragsize.fragsize.table 308 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/full_bed.bed 4.6 MB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.FINAL_hotspot_list_07302025_hg38_sorted.bed.png 43.2 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_coding_postQC_hg38.bed.png 47.6 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_noncoding_postQC_hg38.bed.png 51.5 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_postQC_hg38.bed.png 49.5 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.foresight_clarity_targets_hg38.bed.png 43.6 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.png 51.7 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.png 53.4 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.png 49.6 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 464 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv 539 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 549 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_postQC_hg38.bed.tsv 544 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.foresight_clarity_targets_hg38.bed.tsv 514 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 544 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 544 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 534 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/qc_complete.txt 28 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 619 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv 623 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 624 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_postQC_hg38.bed.tsv 624 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.foresight_clarity_targets_hg38.bed.tsv 623 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 625 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 625 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 625 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 2.1 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv 269.8 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 296.8 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv 381.4 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.foresight_clarity_targets_hg38.bed.tsv 58.7 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 5.5 MB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 5.3 MB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 7.2 MB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/saturation_plot.png 43.6 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/saturation_qc.tsv 77 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 68 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_coding_postQC_hg38.bed.tsv 70 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 73 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv 63 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.foresight_clarity_targets_hg38.bed.tsv 63 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 127 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 107 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 155 bytes Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1_basic_stats.tsv 1.4 KB Jun 05, 2026 5:36 PM
1047_JG-T1-TDNA-1_A23MHWWLT4_1/1047_JG-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats.tsv 5.9 KB Jun 05, 2026 5:36 PM
versions.yml 49 bytes Jun 05, 2026 5:36 PM