File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/6d15ecf98eb5a45bffcd2a949808a2/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 3.7s, est remaining 69.7s, peak mem 2712MB, user 86.1s, sys 1.8s, output queue size 150
progress 10% @chr2:90000001, elapsed 7.0s, est remaining 63.2s, peak mem 3718MB, user 195.7s, sys 3.9s, output queue size 48
progress 15% @chr2:172000001, elapsed 11.6s, est remaining 65.7s, peak mem 5404MB, user 325.7s, sys 6.9s, output queue size 122
progress 20% @chr3:155000001, elapsed 14.5s, est remaining 57.9s, peak mem 5404MB, user 411.6s, sys 7.5s, output queue size 283
progress 25% @chr4:136000001, elapsed 16.9s, est remaining 50.6s, peak mem 5404MB, user 488.4s, sys 8.0s, output queue size 444
progress 30% @chr5:56000001, elapsed 18.8s, est remaining 44.0s, peak mem 5404MB, user 545.4s, sys 8.5s, output queue size 606
progress 35% @chr6:90000001, elapsed 22.2s, est remaining 41.3s, peak mem 5841MB, user 633.8s, sys 9.2s, output queue size 767
progress 40% @chr7:65000001, elapsed 26.3s, est remaining 39.4s, peak mem 6898MB, user 735.8s, sys 10.0s, output queue size 928
progress 45% @chr8:66000001, elapsed 31.8s, est remaining 38.8s, peak mem 7495MB, user 908.8s, sys 11.7s, output queue size 347
progress 50% @chr9:89000001, elapsed 35.4s, est remaining 35.4s, peak mem 7742MB, user 1014.5s, sys 12.6s, output queue size 509
progress 55% @chr10:73000001, elapsed 39.0s, est remaining 31.9s, peak mem 8557MB, user 1126.8s, sys 13.6s, output queue size 668
progress 60% @chr11:134000001, elapsed 43.2s, est remaining 28.8s, peak mem 10248MB, user 1242.1s, sys 14.4s, output queue size 830
progress 65% @chr13:31000001, elapsed 47.2s, est remaining 25.4s, peak mem 11615MB, user 1355.4s, sys 15.1s, output queue size 992
progress 70% @chr14:71000001, elapsed 50.3s, est remaining 21.6s, peak mem 12080MB, user 1465.1s, sys 16.0s, output queue size 1153
progress 75% @chr16:42000001, elapsed 54.5s, est remaining 18.2s, peak mem 12956MB, user 1598.9s, sys 17.3s, output queue size 1132
progress 80% @chr18:13000001, elapsed 60.0s, est remaining 15.0s, peak mem 13268MB, user 1764.6s, sys 18.4s, output queue size 1294
progress 85% @chr19:45000001, elapsed 65.4s, est remaining 11.5s, peak mem 13268MB, user 1924.5s, sys 19.5s, output queue size 1456
progress 90% @chrX:30000001, elapsed 68.7s, est remaining 7.6s, peak mem 13277MB, user 2042.3s, sys 20.1s, output queue size 1618
progress 95% @chrY:53000001, elapsed 70.8s, est remaining 3.7s, peak mem 13277MB, user 2102.8s, sys 20.8s, output queue size 1780
progress 100% @chr7:55000001, elapsed 547.1s, est remaining 0.0s, peak mem 19067MB, user 2662.0s, sys 34.8s, output queue size 5204
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 71921241447
reads: 1527741288
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1166.924 user 26.672 sys 1193.111 real
done: 1 calls 0.007 user 0.037 sys 0.051 real
exec_no_coor: 1 calls 0.019 user 0.010 sys 0.056 real
execute: 1 calls 0.004 user 0.003 sys 547.140 real
idle: 14323 calls 0.520 user 0.062 sys 14291.648 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 19993264128 mem 2663.188 user 35.546 sys 548.680 real