File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/ad880b4e6836d7149ae8c29784e3b8/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_3LU-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:181000001, elapsed 4.3s, est remaining 82.1s, peak mem 3929MB, user 96.9s, sys 4.2s, output queue size 146
progress 10% @chr2:46000001, elapsed 8.7s, est remaining 78.1s, peak mem 5629MB, user 220.8s, sys 7.2s, output queue size 117
progress 15% @chr3:18000001, elapsed 12.6s, est remaining 71.6s, peak mem 8041MB, user 339.6s, sys 10.2s, output queue size 210
progress 20% @chr3:178000001, elapsed 15.8s, est remaining 63.3s, peak mem 9887MB, user 436.0s, sys 11.6s, output queue size 364
progress 25% @chr4:133000001, elapsed 19.0s, est remaining 56.9s, peak mem 10405MB, user 535.9s, sys 12.9s, output queue size 525
progress 30% @chr5:102000001, elapsed 21.2s, est remaining 49.5s, peak mem 10466MB, user 605.7s, sys 16.0s, output queue size 464
progress 35% @chr6:86000001, elapsed 24.3s, est remaining 45.1s, peak mem 10466MB, user 696.3s, sys 16.8s, output queue size 625
progress 40% @chr7:48000001, elapsed 28.4s, est remaining 42.6s, peak mem 10497MB, user 794.4s, sys 17.7s, output queue size 786
progress 45% @chr8:74000001, elapsed 32.6s, est remaining 39.9s, peak mem 10933MB, user 945.3s, sys 19.2s, output queue size 204
progress 50% @chr9:102000001, elapsed 36.1s, est remaining 36.1s, peak mem 11445MB, user 1041.2s, sys 20.1s, output queue size 366
progress 55% @chr10:104000001, elapsed 40.2s, est remaining 32.9s, peak mem 11641MB, user 1153.3s, sys 21.3s, output queue size 527
progress 60% @chr12:2000001, elapsed 44.3s, est remaining 29.6s, peak mem 11666MB, user 1275.9s, sys 22.4s, output queue size 689
progress 65% @chr12:106000001, elapsed 48.6s, est remaining 26.2s, peak mem 11917MB, user 1372.1s, sys 23.0s, output queue size 851
progress 70% @chr14:76000001, elapsed 51.0s, est remaining 21.9s, peak mem 11922MB, user 1466.7s, sys 23.7s, output queue size 833
progress 75% @chr16:41000001, elapsed 56.5s, est remaining 18.8s, peak mem 12169MB, user 1619.0s, sys 24.9s, output queue size 995
progress 80% @chr18:29000001, elapsed 63.4s, est remaining 15.9s, peak mem 12420MB, user 1825.2s, sys 26.4s, output queue size 1151
progress 85% @chr17:40000001, elapsed 69.4s, est remaining 12.3s, peak mem 12443MB, user 2003.8s, sys 27.7s, output queue size 1313
progress 90% @chr22:28000001, elapsed 73.6s, est remaining 8.2s, peak mem 12670MB, user 2135.5s, sys 28.9s, output queue size 1475
progress 95% @chrY:53000001, elapsed 75.8s, est remaining 4.0s, peak mem 12737MB, user 2210.5s, sys 29.5s, output queue size 1637
progress 100% @chr8:38000001, elapsed 91.9s, est remaining 0.0s, peak mem 12877MB, user 2411.4s, sys 31.3s, output queue size 5061
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 77410294291
reads: 1436635500
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1172.515 user 27.269 sys 1201.800 real
done: 1 calls 0.034 user 0.038 sys 0.073 real
exec_no_coor: 1 calls 0.000 user 0.012 sys 0.030 real
execute: 1 calls 0.007 user 0.002 sys 91.910 real
idle: 459 calls 0.166 user 0.001 sys 435.105 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 13504221184 mem 2412.371 user 31.475 sys 93.191 real