File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/6505593edb76565c47670a78f045b3/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (1136_5KC-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/65258ebd274ef7661edc0f1983b4af/1136_5KC-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/30738ae9c929c07a83020ceea2ab4f/1136_5KC-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/6505593edb76565c47670a78f045b3/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/147133606ec6fa41fcb25de1d7c654/1136_5KC-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/db66e177abafc4e1aeb34e801afb82/1136_5KC-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/6c3b311b91e89cc08bba5bc083ebb0/1136_5KC-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/6505593edb76565c47670a78f045b3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/eedc164d16c312f8e1bfd6e5c727f4/1136_5KC-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/2f5862c356d705567fa69a789bc607/1136_5KC-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/93f4c5a301cc22adb3c182f56ca8c8/1136_5KC-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory